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We have run into this issue in a couple of different settings now so we might want to discuss a general approach to the problem of metadata curated across semantic spaces for a given database.
Exa…
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[Confirmed on NodeNorm Dev](https://nodenormalization-sri.renci.org/1.5/get_normalized_nodes?curie=MESH%3AC053590&conflate=true&drug_chemical_conflate=false&description=false&individual_types=false).
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### Basic information
* My operating system and version:
* Linux
* My mzmine version:
MZmine/3.9.0
### What happened
We have problems to include the MS-MS libraries of Pubchem in json form…
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Hello, I stumbled on a surprising interaction that I wanted to show.
I'm using a model generated with AutoKeggRec and the way the model is constructed leads to mergem to consider a H2O metabolite a…
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Dear authors,
Thanks for the exciting work.
While working with the code of preprocessing PubChem dataset, I came across a specific line in a file that I find confusing. Could you please clarify i…
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pubchem rest api `name_type=word` that this module uses for loose (e.g., `water*`) searches appears to be broken. Compare:
* FAIL https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/tropolone/p…
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See e.g. https://nodenorm.test.transltr.io/1.5/get_normalized_nodes?curie=PUBCHEM.COMPOUND%3A118984454&curie=PUBCHEM.COMPOUND%3A16137271&curie=PUBCHEM.COMPOUND:24839622&conflate=true&drug_chemical_con…
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The CHEMBL curie [CHEMBL.COMPOUND:CHEMBL3545252](https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL3545252/) gets mapped to [PUBCHEM.COMPOUND:148123](https://pubchem.ncbi.nlm.nih.gov/compound/Do…
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ritodrine: PUBCHEM.COMPOUND:33572,CHEBI:91775,CHEBI:156577
Even with drug/chemical conflation turned on, these do not resolve into a single clique. As far as I can tell, none of them have an rxcui…
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Is there a way to retrieve the PubChem id from the ChemblApi Drug-Request. To be precise: does the data contain the id?
If not: is there any other way to retrieve this information via the API?