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candidates:
- igraph (library used in SoilRexp and dependency of py2cytoscape)
https://igraph.org/python/doc/tutorial/tutorial.html#creating-a-graph-from-scratch
- pro:
- nice layouts
…
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`cyclient.session.open(session_url=` does not work.
Cytoscape: 3.7.1
CyRest: 3.8.0
Java:
```
java -version
openjdk version "1.8.0_222"
OpenJDK Runtime Environment Corret…
kozo2 updated
5 years ago
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I have some difficulties to bend some edges as I want.
the order :
`edge.get_properties(network=network, edgeList='interaction:0052',propertyList='Bend, Curved')`
gives :
`[{'SUID': 7048, 'visu…
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Hi,
I've noticed that creating a network on cytoscape using igraph and py2cytoscape causes nodes to overlap over one another. Is there a way to prevent this via command line?
Thanks!
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Dear all
I have uploaded three notebooks in network analysis.
1) Basic network terms (still need to finish part four with attributes/colors)
2) Protein-protein ego network (here they apply the bas…
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First off, thanks for this awesome repo. Was wondering what the best way is to use a yFiles layout in dash-cyto. In particular, I find their hierarchic layout really useful but can't seem to find anyt…
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When i print the nodes and edges, it shows all the edges, but the render method visualises a blank white screen.
Thank you
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ub16hp@UB16HP:/media/ub16hp/WINDOWS/ub16_prj/py2cytoscape/examples$ python3 samples_for_v0.6.0.py
Traceback (most recent call last):
File "/usr/local/lib/python3.5/dist-packages/urllib3/connect…
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Hi,
(If I got it right) it seems after using a map function there is an access by index which throws an error in python 3.x as map no longer returns a list.
`
if layout is not None:
…
cs48a updated
6 years ago
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Hello,
how can I resize the nodes of a graph depending on the length of their labels?
I.e., a node with a "long" label should be wider than a node with a "short" label.
Thank you very much for y…
mtill updated
5 years ago