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Just trying to understand the QTL experiment a bit more.
The [QTL dataset](https://www.giladlab.uchicago.edu/data/jointLCL/) is unavailable.
From the paper it seems unclear whether p=600 or p=7…
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See PowerPoint slides describing the problems. I had to click around through a number of different pages concerning a QTL to finally find a page that actually had a link to the paper. Since this dat…
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Dear @yu-1011 @liusihan @Fefe-W
Thanks for your the great paper!
The EAS eQTL/sQTL summary data download urls in the paper are broken. How to download EAS QTL summary data?
Thanks in adva…
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### Search before asking
- [ ] I searched the [issues](https://github.com/alibaba/yalantinglibs/issues) and found no similar issues.
### What happened + What you expected to happen
When i use…
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I have noticed that there is missing data in the mixed.qtl.Hwang_King_2016 directory. The *qtl.tsv file only contains 2 QTLs but the SoyBase MySQL database lists 27 QTLs.
```
#qtl_identifier tra…
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When no QTL were identified, the QTL profile plot will be generated, but the pdf cannot be opened. THis causes problems for us, because we collect automatically all pdf and combine them together (usin…
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As in https://github.com/LegumeFederation/cmap-js/issues/149#issuecomment-2312877729, the linkout urls use an obsolte url which now returns a 404
Ex: https://legumeinfo.org/feature/Phaseolus/vulgaris…
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Hi Pankaj
I've added a new worksheet to the attached which details the unique
traits/rows in the main file and with an initial definition of the trait
(parent and possible child relationships). It's a…
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tensorQTL has this option:
```
python3 -m tensorqtl ${plink_prefix_path} ${expression_bed} ${prefix} \
--covariates ${covariates_file} \
--cis_results ${cis_results_file} \
--mode c…
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Hello,
For interaction using cis.map_nominal I am getting the following headers from *cis_qtl_top_assoc.txt.gz file:
[1] "phenotype_id" "variant_id" "start_distance" "af" "ma_s…