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Hi everyone! Apologies if this isn't the right place to put this.
I'm interested in applying a time-dependent rate law for one of my reactions. Currently what I've found to work is a structure like…
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SI units works, i.e.
```julia
@test_nowarn @reaction_network begin
@ivs t [unit=u"s"]
@species begin
X1(t), [unit=u"mol/m^3"]
Z1(t), [unit=u"mol/m^3"]…
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**Describe the bug**
I have this model:
[Prob 5 Model C (new params).json](https://github.com/user-attachments/files/17167642/Prob.5.Model.C.new.params.json)
I want to edit its rate laws using th…
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``` python
from numpy import exp
from ecell4 import *
with reaction_rules():
A > B | exp(A) * A
m = get_model()
print([rr.as_string() for rr in m.reaction_rules()])
```
must show `['A+A.exp>B+A…
kaizu updated
4 years ago
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```
What steps will reproduce the problem?
1. Create a cBNGL model
2. Include the writeSBML() action
What is the expected output? What do you see instead?
Given a reaction @c1:S1 + @c1:S2 -> @c1:S3 …
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See https://discourse.julialang.org/t/reaction-rate-laws-of-chemical-reaction-networks/56049
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A fully specified AMR should contain all of the following components:
- Parameter values/distributions
- Rate laws expressions
- Observables (Optional)
- State Initial values
Currently, none of…
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```bash
git clone https://github.com/gyorilab/mira.git
git clone https://github.com/DARPA-ASKEM/Model-Representations.git
cd Model-Representations/validation
python model_inventory.py --format md …
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I notice you had an issue with 2nd order reactions with Tellurium. Note that we don't automatically generate the rate laws and it is up to the user to enter the correct rate laws for a 2nd order react…
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**Using COBREXA.jl❓**
Will this repo utilize https://lcsb-biocore.github.io/COBREXA.jl/stable/ for flux balance analysis?