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Hi all, this summer I'm planning on adding a lot of graph/network analysis features relevant for chemical reaction networks to Catalyst. A smattering of things this might include:
- Detecting [co…
vyudu updated
1 month ago
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Implement ability to generate a reaction network from a model file.
Pysb and NetworkX are two packages to check out.
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Imagine if we have a vector-valued species:
```julia
using Catalyst
t = default_t()
@species X[1:100]
```
where each degrades at the same rate `d`, it would be neat to declare this as a single r…
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**Project description**
Ethr is a comprehensive network measurement tool for TCP, UDP & ICMP developed by Microsoft.
**Metadata**
* homepage URL: https://github.com/microsoft/ethr
* source U…
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## Short description of the problem
"ValueError: max() arg is an empty sequence" was encountered after running anvi-reaction-network.
## anvi'o version
Anvi'o ..................................…
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Make a class that can represent a reaction network. Potentially, the main attribute would be a set of Reaction objects. The class should be able to plot reaction coordinate diagrams based on any therm…
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Hi,
I know you can do this:
```julia
prob = DiscreteProblem(10.0,(0.0,3.0))
jump_prob = JumpProblem(prob,Direct(),jump,jump2)
```
but I would like to do
```julia
sir_model1 = @reactio…
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**Project description**
nicstat is a tool similar to iostat, but for network interfaces.
Originally written by [Brendan Gregg](https://www.brendangregg.com/) for Solaris. Ported to [Linux by Tim C…
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## Short description of the problem
KeyError: 'reaction_network_ko_annotations_hash' when running `anvi-reaction-network`
## anvi'o version
```
Anvi'o .......................................: …