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**Question:**
What is the appropriate Biolink Model slot for a URL associated with a node?
MolePro encountered a data item called "reaction_url" (e.g., https://reactome.org/PathwayBrowser/#/R-MMU-…
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Which non-Reactome databases can be used in `/data/mapping/{resource}/{identifier}/pathways|reactions`?
The databases in `secondaryIdentifier` slot, e.g. GO, can't be searched.
Full list: https:…
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__Terms:__
I've annotated each link using the following terms below. I've provided explanations for what I mean by each term.
[Formatting Issues] Usually an issue with bullet or numbered lists
[M…
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URL that is put into the citation isn’t valid. For example, for R-HSA-71588.1 the URL is given as http://www.reactome.org/PathwayBrowser/#R-HSA-71588.1. A valid URL for this reaction would be http:/…
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Hello, Thank you for this excellent package. This is a question, not an issue raised on the package. I am wondering if its possible to retrieve all human gene-gene interactions as a text file from Rea…
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(low priority)
http://beta.monarchinitiative.org/disease/OMIM%3A147920
Pathways tab
last link is for generic reactome "disease"
http://www.reactome.org/PathwayBrowser/#DB=gk_current&FOCUS_SPECIES_ID…
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In some cases, a Reactome pathway doesn't have any reactions that are directly associated with it. Instead it has a collection of subpathways under it. In those cases, the parent gets imported as a si…
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For Reactome complexes that are controllers of enzymatic reactions, these should be aligned with GO-CAM to specify gene product IDs and not PRO IDs. To do this, we will need to handle two different ca…
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After a closer look, I'm having issues with the data source used for pathways.
```
Pathway::PC7_2008 BMAL1:CLOCK,NPAS2 activates circadian gene expression Pathway
```
Should correspond to the …
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Hi Peter
Looks like these Reactome pathway xrefs are missing:
gluconeogenesis (GO:0006094) = R-HSA-70263
fructose biosynthetic process (GO:0046370) = R-HSA-5652227
galactose catabolic process vi…