-
### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
-
Currently, repeatmasker_wrapper has
```
Cores Allocated 16
Memory Allocated (MB) 59392
```
A single chromosome works but a whole VGP haplotype fails OOM.
Currently trying to get a RAM grap…
-
Hi. I installed RepeatMasker version 4.1.5 and completed configure with Dfam libraries. However, when I run repeatmasker with custom db from RepeatModeler, it creates "general libraries" in the Libr…
-
I am running Repeatmasker on a snake genome using a denovo TE library (created by RM2) on a HPC cluster using 20 CPUs. But the speed is very low and I encounter node failure. I contacted HPC support a…
-
Hi, I am using RepeatMasker v4.1.5 to mask repeats from a shrimp genome P. indicus, the *.fa.cat.gz was produced but the fa file cannot be masked. So I rerun the ```ProcessRepeats``` step:
``
Proc…
-
Hi TobyBaril.
I would like to ask for you help concerning a RepeatMasker error.
We are trying to annotate a new genome assembly of Trypanosoma cruzi, whose NCBI Taxid is 5693. Earl Grey was inst…
-
HI ,thinks for your software
now ,I want to align 3 genome ,but it not be masked by Repeatmasker, should i need to maske genome?
Can I use repeatmodeler and repeatmasker to mask the genome? E…
-
### Description of the bug
I am running the most current version of @marchoeppner dev branch on Tower on a real dataset. The workflow passed repeat masking and produced the `consensi.fa` file but fai…
-
failed to execute: para_RepeatMasker --out_prefix RepeatModeler_out --lib RM_*/*.classified --cpu 4 --tmp_dir para_RepeatMasker.tmp /home/changchuanjun/gene_structure_annotation_20240224/Fuji_Ral-Fuji…
-
**Describe the issue**
RepeatMaskerLib.embl is not built while configuring RepeatMasker-4.1.2-p1 and is requestrd by DateRepeats
```
rpm_maker:RepeatMasker/RepeatMasker-4.1.2-p1 > DateRepeats
I…