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Hello,
I am trying to match the pdb_chain_id to RNA family labels. Is there a dictionary/json with the mapping?
I wasn't able to find it browsing through the repo.
Thank you in advance
Olivia
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Differences between GOC and GOA files
GOC file: snapshot from 2024-11-04T20:23
GOA file: [GOA ftp](https://ftp.ebi.ac.uk/pub/contrib/goa/panther_proteomes/ ), file generated 2024-10-08 11:09
…
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Hello!
I'm having a slight issue with the annotations generated by EGAPx. When I translate the CDS into a protein sequence, I'm seeing a lot of premature stop codons. This is a species where I am s…
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There are several ncRNA terms that refer to specific RNA families and mirror the [Rfam](https://rfam.org) RNA family classification, for example:
- [OxyS_RNA](http://sequenceontology.org/browser/cu…
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Yeast has
RNA polymerase I core factor complex (GO:0070860)
A RNA polymerase I-specific transcription factor complex that is required for the transcription of rDNA by RNA polymerase I. In yeast the …
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All the miRNA_gene_family are information artifacts, but they should probably be classes of (material) miRNA, and superclass of their respective (RNA) members. If they are, then the "gene family" is …
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### Overview
Build an heterogeneous graph, similar to the one made with runs / sOTUs, but with sOTUs and [STAT].
STAT: Could be either top STAT hit or all STAT hits above some threshold, as one sa…
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We should create exports of the taxonomic assignments for all Rfam families. This is basically what is done the rfam-taxonomy repo but the exports should be part of our FTP. I'm thinking we should use…
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Hi,
I have two questions :
1. How can we use single cell data normalized with SCT ? I have the following error :
Error in as.matrix(sc_dataset@assays$RNA@data) : no slot of name "data" for …
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when i tried to build a TE index,there always show me that
INFO @ Thu, 24 Oct 2024 11:14:53: Building TE index .......
chrA01 EDTA DNA/Helitron 1241 1375 . - . gene_id "nbis-gene-1"; transcrip…