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Hello,
I am trying to match the pdb_chain_id to RNA family labels. Is there a dictionary/json with the mapping?
I wasn't able to find it browsing through the repo.
Thank you in advance
Olivia
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Sorry for the title, I'm not sure how to describe the idea there. I'd like to suggest the inclusion of a Text block that one could access through MN directly (not sure if this is possible) using the T…
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Hello,
Thank you for developing such a useful tool. I have some issues with some PDB entries (like 2hol). The pdb file has some missing atoms for example in U46 there is no base and the U residue i…
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When I create an RNA_DeNovoProtocolMover() using a Python script, it stops running and throws an error with code ‘139 (interrupted by signal 11:SIGSEGV)’ either during initialization or when applying …
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There is currently an issue parsing these PDB entries:
- `1ts6`
- `2g10`
- `2k9y`
None of these entries contain RNA chains.
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```
2 of chains: A
1 of RNA chains: A
wrong atom order in residue of chain A resid 1 P O5'
wrong atom order in residue of chain A resid 1 OP1 C5'
wrong atom order in residue …
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I tried to predict two RNA strands with cas9 (PDB ID: 4OO8).
However, RNA structures were crashed like fragment of skein.
Not only for this, but also same RNA structure were simulated without protei…
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It seems as if not all [_chem_comp.name](https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Items/_chem_comp.name.html) are pushed into [HETNAM](http://www.wwpdb.org/documentation/file-format-con…
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```
rna_pdb_tools.py --rpr 1ehz.pdb --replace-hetatm
Traceback (most recent call last):
File "/Users/magnus/miniconda3/bin/rna_pdb_tools.py", line 7, in
exec(compile(f.read(), __file__, 'ex…
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```python
[mm] rna-search-with-a-new-alphabet$ python test.py
Traceback (most recent call last):
File "test.py", line 3, in
a = RNAalignment('RF01074.txt')
File "/home/magnus/work-src/rn…