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Hi @smorabit,
I would like to know if it is possible to use hdwgcna with single Cell ATAC coverage data instead of the SC RNA-seq expression matrix. How should the metacells function be handled? Wh…
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**Describe the bug**
The DAG is incorrect for workflow github.com/hubmapconsortium/sc-atac-seq-pipeline/HuBMAP_scATAC-seq_Pipeline:feature/remove-curly-braces
after fixing https://github.com/dockstor…
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Hello,
Thanks for this very useful package!
I just have a few questions after runnning on single-cell ATAC-Seq libraries generated from the 10X multiome kit. I ran using the following commands:
…
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Create an endpoint to generate the csv needed by the data sankey diagram. Diagram [here](https://software.docs.hubmapconsortium.org/data-sankey/index.html) example csv [here](https://github.com/hubm…
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Hi, thank you very much for developing such a helpful tool! I am interested in mapping multimodal data such as SHARE-seq to reveal spatial patterns of chromatin accessibility, but I don't know how to …
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Current proposal:
There are only two levels of topics, the main card, and tags within the card
```
- Help (one for each project e.g., Scanpy, Muon, ...)
- Tags = project subpackage or releva…
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Hello,
I am running SEACells on a dataset of sc-ATAC-seq of 31000 cells and I am inferring 310 cells.
When checking for quality of results, I am surprised at the amount of cells that have 0 non-…
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add synonyms to nifstd
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Credits to Katie Hoadley, who would be interested in using this on a dataset of hers