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Hi, I have some unpaired scRNA-seq and scATAC-seq data, they are sequencing the same samples, but in separate scRNA-seq and scATAC-seq assays, so the cell barcodes are different in these datasets. How…
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Dear Prof. Fan,
Thank you again for developing this useful package!
I encounted 'Error in shape[k]
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Hi @dg520 ,
Hope you are doing well :)
I have been trying to use IRFinder on BAM files generated by cellranger to quantify IR. On doing so, I get the following error :
```
WARN: This sampl…
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Hi everyone,
I’m currently working on Xenium (10x Genomics) data analysis, which contains 321 targeted genes. To explore more, I would like to merge and integrate public data with my Xenium dataset…
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Hi, Dongyuan! I have a question about generating scRNA-seq data using gaussian family.
When I generate scRNA-seq data with gaussian family like the code below
```
example_data
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Hi! I noticed that all the data in your article is the full-length scRNA-seq,I wonder whether can RSEA be applied on 10x data? Thank you for your atthention!
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Hi!
Our scRNA-seq data was processed using the Seurat package. In order to run scDRS with our scRNA-seq data, I first converted the Seurat object saved as an RDS file to an h5ad file using the foll…
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Hi Thanks for the great work!
I tried to call somatic variant using clairS, but the output vcf only returned 1 variant on Y chromosome..
My datasets are PacBio long-read scRNA-seq with a bit low co…
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Hello
Thank you for developing this great and wel document package.
Wondering if `EnrichmentBrowser` can use scRNA-seq data input? If so, how would you recommend doing this? I am especially wo…
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Hi,
I have been using MATES for short read data recently and I wanted to try ATAC data only, however, I am not sure how to process the data.
First, to keep multi mapping information, is it necessary…