-
Hi Dr. Kim,
This work is very impressive! I am working on a scRNAseq analysis project of my own in which I am attempting to integrate multiple publicly available scRNAseq datasets together for simi…
-
Hi, you've done a fantastic work!
I want to use your scRNA data as reference, but the rds.gz file in [GSE264407] seemed to be broken up, could you share me the good one?
-
### Description of the bug
Specifying indices should work as expected from a nf-core pipeline, i.e.
* igenomes should be respected
* it shall be possible to specify pre-computed indices and they sh…
-
```shell
---------------------------------------------------------------------------
You are running Scasa v1.0.1 using docker ....
------------------------------------------…
-
### Description of the bug
I am having trouble getting the following test to work. Any clues to what I am doing wrong.
The command I ran was:
nextflow run nf-core/scrnaseq -profile test,docker --o…
-
### Description of the bug
Similar to #374 perhaps, I get a `Path value cannot be null` error when running `--aligner cellrangerarc`.
My sample sheet is:
```
sample,fastq_1,fastq_2,fastq_barcode,sa…
-
### Description of the bug
Running CellRanger with all GEX samples, in which there are multiple barcodes per sample, but the all go to the same sample (see the samples & barcodes tables below).
Thi…
-
Hi Alex,
I have a question about best practices for dealing with multi-mapping reads in scRNA-seq data analysis, particularly when looking at transposable elements (TEs). Due to the nature of TEs,…
-
### Description of the bug
I am trying to run the scrnaseq nextflow workflow with the following error message:
ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:GTF_GENE_FILTER ([])'
…
-
### Description of the bug
nf-core/scrnaseq test using conda fails with the following error message. Fetched from '.nextflow.log'. Thanks!
Caused by:
Process `NFCORE_SCRNASEQ:SCRNASEQ:MTX_CONV…