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Ability to use the technical SDRF for MSFragger
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## Bug report
(Please follow this template replacing the text between parentheses with the requested information)
### Expected behavior and actual behavior
When running a pipeline (in this i…
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### Description of the bug
Plus 28 more processes waiting for tasks…
Execution cancelled -- Finishing pending tasks before exit
-[nf-core/quantms] Pipeline completed with errors-
ERROR ~ Error exe…
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technology type is mandatory in SDRF but no section in the SDRF mentions it, and even when it is added to the templates, we have confusion about where should be. The validator says after the assay nam…
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### Description of the bug
Hi all, I keep encountering the following error on diverse datasets that I am trying to use with quantms. I have tried it multiple times on the same HPC cluster but with di…
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We had an issue recently for SDRF that validation error but the error was unknown. After reviewing the SDRF the validation error was due to extra semi colon in on of the columns shown in the image bel…
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Hi! I am uploading an SDRF file produced by FragPIPE (here is an example with only one row to demonstrate the issue: [1file.sdrf.txt](https://github.com/user-attachments/files/17246149/1file.sdrf.txt)…
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ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:INPUT_CHECK:SAMPLESHEET_CHECK (sdrf.tsv)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:INPUT_CHECK:SAMPLESHEET_CHECK (sdrf.tsv)` terminate…
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### Description of the bug
The errors are reported when i ran PXD001819 LFQ datasets (about 10G mzML files). It looks like it's running out of memory? But the available memory is 120G. So I'm not …
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```
Command output:
/usr/local/lib/python3.12/site-packages/sdrf_pipelines/sdrf/sdrf_schema.py:355: FutureWarning: DataFrame.applymap has been deprecated. Use DataFrame.map instead.
validatio…