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The idea of the Relate test is very simple: you highlight a clade (often defined by a mutation) and look at how the number of descendant lineages change over time, usually just comparing the frequency…
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Dear
I have been using recently raisd in addition to other statistic descriptive to look at pattern of positive selection in one of my population.
Using pi, tajima's D and H12 I could strong si…
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0.7 looks like this:
![2024-09-24-224558_547x267_scrot](https://github.com/user-attachments/assets/812d8008-18cc-4c2d-af47-752ecc1ca22e)
0.8 looks like this:
![2024-09-24-224607_825x421_scrot…
Moult updated
1 month ago
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The text says about the haplotype network for GSTE2:
> The haplotype network figures make it easy to spot the selective sweeps and gene flow between Burkina Faso and Ghana (but not Cote d'Ivoire)…
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This tutorial and the original paper have mentioned the polarized SNPs. Some other literature implied that the polarization or not may result in the different SFS, and thus overall present somewhat di…
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Hi, I am looking for a method to quantify the effect of background selection along the genome in 20 diploid samples, I am wondering could diplos/HIC do this analysis. Could you share your help? Thank …
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I thought it would be interesting to compare how tsinfer+tsdate do against the new "Threads" program (https://pypi.org/project/threads-arg/0.1.0/).
As a test, I have a stdpopsim model with 2 chimp …
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Hello,
I am using RAISD to identify selective sweeps in three different populations of an insect and I have been having trouble to get manhattan plots from my analyses. I am wondering if is related…
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[sims.ipynb.zip](https://github.com/tskit-dev/msprime/files/13653216/sims.ipynb.zip)
Above is a Notebook describing the issue in more detail. The summary is that: when running basic selective sweep…
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Hi,
I downloaded stdpopsim using the section on managing your environment in conda shown on this [link](https://docs.conda.io/projects/conda/en/latest/user-guide/getting-started.html#managing-envir…