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We tried running the SOAPdenovo_array.sh script using 30 .fq files of total size 557GB as input and a reference genome with a total size of approximately 17GB.
The SOAPdenovo_array.sh script requires…
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For the escape sequences:
C:\Assembler>C:\Apps\sbasm3\sbasm.py sbasmtest.s
C:\Apps\sbasm3\sbapack\direct.py:504: SyntaxWarning: invalid escape sequence '\.'
"""
C:\Apps\sbasm3\sbapack\files.py…
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This is low priority. These instructions could be used to simplify certain instruction sequences but those simplifications have not been done on arm/arm64 yet anyway (despite having more powerful bit …
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Hi PBSIM3,
I would like to use PBSIM3 to generate some simulated ONT sequences for my ~12kb DNA sequences. What I want to do is to assemble these simulated ONT sequences. However, the assembler is …
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The restrictions on LR/SC sequences that guarantee progress ("10.3. Eventual Success of Store-Conditional Instructions" in the unprivileged RISC-V spec) state that:
> • The loop comprises only an L…
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### Description of bug
We performed an hybrid assembly using metaspades (ONT + SR), we had really huge coverage. Nonetheless, one of the final we discovered that there were 5 minority SNPs that were …
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I'm curious if the various code snippets like:
```
// nopw (%rax,%rax)
0x66, 0x66, 0x66, 0x66, 0x2e, 0x0f, 0x1f, 0x84, 0, 0, 0, 0, 0,
// mov %fs:0,%rax
0x64, 0x48, 0x8b, 0x04, 0x25, 0, 0, 0, 0,
…
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Hi there,
We are using hifi-asm to assemble human genome sequenced on Pacbio Revio machine, the coverage of the sample is roughly 30X (may be lower though), we found that hifi-asm might miss one ha…
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I've found reassembly module exists strange behavior, which seems to exhibit different behavior compared to the tcpassembly module.
According to [issue](https://github.com/google/gopacket/issues/48…
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Dear Graeme Connell,
There are a few problems with the TCP "reordering" of tcpassembly:
- If the Assembler receives duplicate out of order packets then it will emit an extra Reassembly struct into th…