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Hi and thank you for all your work with this pipeline!
I am having a bit of trouble analyzing my PacBio Kinnex full length 16s rRNA data. The data I received from the sequencing center were alre…
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Thanks for maintaining this.
This isn't an issue per se ( feel free to close it ), but more of an inquiry since I've been unsuccessfully trying to dockerize this piece of software for testing purp…
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Hello, I am attempting to run Pairwise Stitching on an SGE cluster.
I realize that the code is untested (at least according to the online tutorial) but I have it working well on our cluster with the …
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### Describe the bug
un called with config file /mnt/odd/rs/v1/output/log/pipeline_APP0Base/107925100_1/cpac_pipeline_config_195db324_2024-09-11T03-18-11Z.yml
raise exception
File "/code/run.…
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Opening an issue to triage the segfault that seems to be happening in th SGE tests.
For some time the SGE tests have been failing. When you look at the logs of [a recent run](https://github.com/das…
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Sage often falls into a state where it just casts Dyskrasia (II) over and over..
even if not a single enemy is nearby or there is even no combat at all.
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I'm having trouble getting call caching to work with Singularity and SGE, and I'm wondering if anyone has a working example config or some pointers. My config is below, minus passwords and specific pa…
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Hi,
I encountered an error in the very last step of `asm_sge/8-hicPipeline/final_contigs/8-hicPipeline/hic_scaff.sh`
(not in `asm_sge/8-hicPipeline/hic_scaff.sh`!
`asm_sge/8-hicPipeline/hic_sca…
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**Describe the bug**
I have a pipeline for an SGE-based cluster which looks roughly like
```py
import parsl
from parsl import bash_app
from parsl.channels import LocalChannel
from parsl.co…
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Psyche is listed as "Psych option - Weaves Psych when available." under the single target DPS feature. This option currently doesn't work properly.
Under movement options, there are four checkmarks…