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Getting an error in plot_signatures function:
Error in quantile.default(late_early, 0.05) :
missing values and NaN's not allowed if 'na.rm' is FALSE
Looking in more detail at the function, it…
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Greetings Dear developers!
I am having some problems using the "Multi-molecule formula" option in the Drug Reponse Association and Drug Reponse Difference analyses. I'm using a formula model that I…
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Hi, Dr.Chu
Thank you for your excellent work. Could you provide some examples and code related to the downstream analyses, specifically "Computing z-scores of signature genes for Z of the cell type…
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Is there a way to extract genes from the scpa output?
thanks
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Hi @dviraran,
I would like to use xCell for deconvoluting some blood samples with a different reference profile.
I am wondering if you are using all the 5079 genes listed in "13059_2017_1349_MOESM…
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Hi everyone,
I am analysing a single cell RNAseq (as seurat object) and I have a signature/list of genes (added as a module in the seurat Metadata with AddModuleScore).
I know how to use Monocle 3 …
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Dear authors, I am now using ssgsea method in gsva to evaluate the samples' enrichment score in a dataset, but the result is all NA, I would be very grateful if you could give me some guidance on that…
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Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment - Michael B. Burns et al. - Genome Med
https://pubmed.ncbi.nlm.nih.gov/26170900/
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I tried rds
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hi,
thank you for creating an awesome computational pipeline.
i have a quick question regarding the usage of AUCell for pathway analysis. as far as i know, the enrichment terms consist of both up …