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### Description
Hi,
I am working with tumor only vcf files generated by Balsamic from different versions. To be precise I am using `SNV.somatic.xxx.vardict.clinical.filtered.pass.vcf` files. It co…
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Maybe we should allow the input of start position / end position and a list of SNVs. When having a reference, the information contained in these data is equivalent to that of the reconstructed sequenc…
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Hi,
I used clairs(v0.4) to call somatic SNV/InDel(tumor/normal paired), but the PASS variants number is ~6w. Is it normal?
Compare to deepsomatic, the somatic SNV/InDel number is ~1.7w.
Do you …
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现在只能添加文件夹但是无法删除，是否可以添加删除仓库文件夹的功能呢
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I wonder if miRge3.0 output meets miRtop standard as in miRge2.0.
If not fully compatible, I wonder if at least the variant types are named following miRTOP suggested classification scheme:
iso_5…
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If it is too complicated/heavy to do the full filter, consider adding a second step filtering the results of the initial search further in the controller or directly on page.
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Hi Daniela,
It's Ken, I have posted my issule "Analyzed bams uder subdirectly" on May 17, 2023.
Thank you again for your help at that time.
Unfortunately, I had to involve other project right a…
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I have run dpclust with pairs of whole genome samples for each patient, comparing the clones between a primary tumour and a metastatic tumour for each patient. The clustering works for all the patient…
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Hello,
I think Susie can only handle multi-allelic variants when these have been split into biallelic variants - is this correct? Unfortunately this isn't always easy to do (especially for CNV whe…
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Hi! Dr. Dou,
Thank you for developing this great software Monopogen for both germline and somatic SNVs detection in single-cell sequencing data. We found it very efficient in somatic mutations call…