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**First check**
- [ ] I used the GitHub search to find a similar issue or discussion and didn't find it.
- [ ] I searched [GetOrganelle.wiki](https://github.com/Kinggerm/GetOrganelle/wiki) context, …
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### Description of bug
Hi everyone,
I encountered an error while using SPAdes-3.15.5 to assemble a diploid genome (~560 Mb) with 0.67% heterozygosity. About 124 GB of corrected reads were provideed…
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### Description of bug
We migrated our Jenkins server to an r7i.2xlarge instance (8 vCPU, 64 GiB, DDR5 memory). One of our Jenkins jobs includes building spades from source. Here is an excerpts of th…
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Add tests for [MetaCoAG](https://github.com/metagentools/MetaCoAG) in `gbintk`.
- [ ] test spades input
- [ ] test megahit input
- [ ] test flye input
- [ ] test that the [bins have the correct …
Vini2 updated
14 hours ago
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Add tests for [GraphBin2](https://github.com/metagentools/GraphBin2) in `gbintk`.
- [ ] test spades input
- [ ] test megahit input
- [ ] test flye input
### GraphBin2 on spades
File name: `…
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Hello, I am conducting research using myBaits UCE Coleoptera 1.1Kv1.
I followed the 'Phyluce Tutorial' exactly as described, and I am currently at the "Assemble the data" step, using 'phyluce_assem…
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I believe this workflow could benefit from more simplicity, given that we don't intend for others to develop new algorithms for projecting BGCs.
I suggest collapsing the following 3 modules into one …
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A23763F7206624341B18E7EAD75E
First see how GIB and WBridge handle this
![image](https://github.com/user-attachments/assets/5b8c0711-d08d-492b-bd64-1877822ba614)
And nor for BBA
![image](http…
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Hey Rhys
I was wondering why the same long reads used for the metaflye assembly are being used for the spades hybrid assembly with Short reads that did not map to the long read assembly. Wouldn't …
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We noticed an issue with our installation of spades in a conda environment used to test an influenza virus analysis tool called FluViewer here:
https://github.com/BCCDC-PHL/FluViewer/issues/37
T…