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Why do `fromGTF.novelJunction.[AS_Event].txt` and `fromGTF.novelSpliceSite.[AS_Event].txt` files not report an inclusion level? Both an inclusion and skipping form are reported in these files, so why …
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**I have read the paper (https://doi.org/10.1038/s41467-020-15171-6)
and the manual (https://flair.readthedocs.io/en/latest/) and I still have a question about**
- align
- correct
- collapse
…
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The Pangolin predictions from the SpliceAI Lookup have consistently match my locally computed Pangolin predictions. However, I noticed today that a Pangolin prediction from the SpliceAI Lookup websit…
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Hello,
I installed the package on an Ubuntu 22 server.
When running
fds
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Hi,
The splice site scoring is a nice feature. I ran the perl script for SE SS scoring and noticed that the amount of sequences I get for both donor and acceptor scores are quire low. I pre-filter …
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add an option to allow this.
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Hi, I am confused of the pathogenicity annotation of splice_site mutation.
In two articles recently published in NEJM, one classified splice variants affecting penultimate and the last exon as VUS or…
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Hi,
thanks for creating such a comprehensive framework for splicing analysis.
I have recently come across SpliSER (https://github.com/CraigIDent/SpliSER) a tool that, I understand, computes spl…
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Hello,
I got an error when I ran `run.py`. I don't know perl or python. Here is the error:
`mnt-JULiP: 27-Sep-24 16:29:28: Creating output folder ...
mnt-JULiP: 27-Sep-24 16:29:28: Generating spl…
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hi,
I am using STAR-Fusion and running it on a dataset with the parameter --no_annotation_filter.
I have noticed that one of the chimeras is filtered out from star-fusion.fusion_predictions (found …