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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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Hi,
I am doing population calling using 100 samples as mentioned here (#77 ).
It runs good but when it comes to force calling, I had an error like below.
I assume the size of the VCF using in "Ivcf…
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Hi,
I encountered an error while running the kage index, which seems to be an issue during the parsing of the VCF file. My input files were a chromosome from the genome and a VCF file from PGGB, wh…
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[Breaking Lander-Waterman's Coverage Bound](http://biorxiv.org/content/early/2016/06/23/060384) - assembly
[Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads.](https://w…
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Hello,
I've noticed that some variants are reported as PRECISE and with a PASS filter but when taking a look at the alignment in the IGV the position reported is wrong in comparison to the actual p…
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Creating this ticket per the discussion in #632.
For calling SVs from long read sequence, these are mainly detected by reads having supplementary alignments. It would be very useful to be able to s…
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- [ ] Proposal added
- [ ] Discussed in LDM
- [ ] Decision in LDM
- [ ] Finalized (done, rejected, inactive)
- [ ] Spec'ed
See
- https://github.com/MattWindsor91/roslyn/blob/master/concepts/do…
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[Multiformat](https://github.com/multiformats/multicodec/blob/master/table.csv) has an extensive list of data types and encodings, which would allow compact representation of relevant cryptographic pr…
vdods updated
7 months ago
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# Simple encoding of unions in C#
Unions are a feature where the runtime representation matters a lot to the trade-off between expressiveness and performance. Here's a simple way to encode *type un…
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Here are some thoughts on a type system for Funk—I just took the examples from the slides and wrote some ideas about what their inferred types ought to be (and why). I’m just focusing on static types …