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Hello,
is it possible to see differences in lengths in genes like for structural variations ?
Thank you in advance!
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## Describe the issue
When annotating an SV, VEP throw error.
### System
- VEP version: docker 112.0
- VEP Cache version: 112
### Full error message
Can't locate object method "cdna_coords"…
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Thank you for providing such a good tool. I tried to simulate various types and lengths of structural variations on a normal cell line, and a total of 40 were simulated at once. However, I have been r…
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Hello, I am currently using FreeHiC in my work and I would like to simulate some structural variations on GM12878. How should I set parameters to simulate multiple different types of structural va…
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When I tried to annotate the structural variation, the file of ‘all.anno.exonic_variant_function’ was empty and there were no errors
![image](https://github.com/WGLab/doc-ANNOVAR/assets/61311726/646b…
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Hi:
I'm looking at some 30x ONP human genome data and seeing that sniffles appears to overcall variants as translocations (BND) when in fact they contain a duplication. These BND variants are being f…
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Thanks for the amazing work. Could I please ask where to find the identified structural variation results?
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Hi,
Does anyone in the lab have any experience trying this for Manta-called SVs? My project is specifically focusing on large structural variations.
Thank you!
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It will be great if it can show a custom track, like the UCSC genome browser.
Updated:
My goal is to check whether SV break an enhancer or not. Currently, it is not easy to get the location of a …
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): v1.2.9
- OS name and version (`lsb_release -ds`): Red Hat Enterprise Linux release 8.5 (Ootpa)
**To Reproduce**
Exact bcbio comma…