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Dear Team,
I have question related to reported break points of SVs by Sniffles. Are breakpoints detected at single nucleotide resolution(exact breakpoints)?
Thank you.
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Hi,
Thanks for developing this awesome tool.
I'd like to call somatic structural variants (SVs) using paired tumor and normal samples. However, cuteSV can only process one sample at a time.
I…
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Thought I had written this up already but I can't find it now, so this might be a duplicate 🤷
* Is there any wildcard syntax? SVS communicates with the SVS viewer using wildcards, so I thought the…
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Hi,
Thank you for developing this great tool! The performance of PanPop is really impressive.
After reading the paper, my understanding is that PanPop improves SV merging from different tools / …
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Hi,
I used Severus to call somatic SVs, but the number of somatic SVs is only ~200(tumor/normal paired sample).Is it normal?
Best regards.
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### Operating system
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### Platform
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### OpenSlide Python version
1.1.2
### OpenSlide version
3.4.1
### Slide format
SVS
### Issue details
I have SVS files stored on a Google Cloud Storage…
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### Topic
**Convert whole slide image to DICOM files Using the WsiDicomizer library**
### Solution
```python
from turbojpeg import TurboJPEG
from wsidicomizer import WsiDicomizer
input_file = '62658…
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I have assembled a single haplotype and aligned it to the hg38 reference genome. Then, I used SVision to call structural variants (SVs). When I called SVs using each haplotype separately, both haploty…
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Good afternoon,
I'm writing this to report an issue I've been having while trying to do a test run for graphtyper's genotype_sv command.
I ran 2 sv-callers: Manta and Smoove on 50 samples and th…
ghost updated
1 month ago