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When making prediction using predict.py, here is the example input
,CDR3b,CDR3a,peptide,MHC,binder
0,CASSIRASYEQYF,CAGASGNTGKLIF,GILGFVFTL,HLA-A*02:01,1
1,CASSIRSTDTQYF,CAGSGGGSQGNLIF,GILGFVFTL,H…
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Hello,
I have some whole-genome sequencing BAM files of T-cell leukaemia. I was wondering how I can modify IgCaller to call T-cell receptor (TCR) rearrangements. Some guidance on how I can modify t…
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As I mentioned above, I am trying to find out what is going on with some flv_trust4 data totally unsuccesfully.
On top of the lack of efficient guidance from the company, we made numerous trials g…
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geoidesic — Today at 9:36 PM
I'm having trouble with the ready hook.
I'm creating a module (A) that depends on another module (B). In A's ready hook, I get a value from game.moduleB.value and use…
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Thank you very much for your amazing project! We have a few questions from our attempts running this model.
[1] We observed some interesting patterns when running tcr-esm. More specifically, we gen…
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When I run 5p10XTCR with the example data TCR3.fastq.gz on my MacOS system, I got the error:
"Traceback (most recent call last):
File "/Users/Home/nanoranger/pipeline.py", line 236, in
util…
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Hi! nice tool! I am struggling to run the pipeline. Could you explain a little bit more what is the format that you need in order to run your code? How can we bridge exactly the data format from scirp…
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- 52 (or more) samples - triple negative breast cancer
- 52 (or more) samples – ER positive and PR positive and HER2 negative breast cancer
- 52 (or more) samples – HER2 positive breast cancer
h…
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### Contact Details
philippe.bourgau@gmail.com
### Feature Request
The TCR tool only reverts the code files, and keeps the failing test. The original TCR was also reverting the tests. These 2 behav…
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### Contact Details
_No response_
### Describe the bug
Whenever the python code gets into an infinite loop in the test, TCR stays there and we have no choice but to kill and restart it.
### To Rep…