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> Next-generation sequencing (NGS) technologies have enabled affordable sequencing of billions of short DNA fragments at high throughput, paving the way for population-scale genomics. Genomics data an…
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https://doi.org/10.1101/103994
> As high-throughput biological sequencing becomes faster and cheaper, the need to extract useful information from sequencing becomes ever more paramount, often limit…
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There is no hurry for this as Andrew is on his placement at SciBite , but during the RNA Central meeting I said we would export the publications to see if they could be used to improve the gene summ…
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Dear Dr. Li,
I am currently trying to achieve shortest runtime by utilizing the available resources on the HPC that we have at the moment (128 threads CPU with 128GB RAM). Our dataset is ~400bp DNA…
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### Data Owner Name
NIH - National Institute of Health
### What is your role related to the dataset
Data Preparer
### Data Owner Country/Region
United States
### Data Owner Industry
…
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I'm running codacore on a dataset of ~300 samples. I'm conducting binary classification with default parameters, and if I just run the `codacore()` function multiple times (nothing else changing), I g…
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Proposal:
Flags
--calculateShardSizeBasedOnCoverage (default true)
--basesPerShard (overrides if above is false)
Reads
- get coverage stats
- throughput ~= 1M reads / second / stream (dependent on i…
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@zradai @laczkol
As @albertbokor-unideb found out, there's an official Docker image here:
https://hub.docker.com/r/multiqc/multiqc
Oddly there are no instructions on how to use the Docker image on…
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Hi Salmon team
Are there plans afoot to support quantification of scRNA-seq data with unique molecular identifiers (UMIs)? UMIs are very commonly used in scRNA-seq data now, and correct quantificatio…