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Nice list from Mike Love
Rendered: https://biodatascience.github.io/compbio/
Source: https://raw.githubusercontent.com/biodatascience/compbio/gh-pages/index.Rmd
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* **What is the role o…
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Identify at least 2, ideally 3 alternative methods that can use prior information (known targets of transcription factors) to predict TF activities on single-cell transcriptomic profiles.
These met…
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https://doi.org/10.1101/242818 https://www.biorxiv.org/content/early/2018/01/04/242818
> Breast cancer remains the most common type of cancer and the leading cause of cancer-induced mortality among…
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Hello fellow team members!
My name is Bruno Grande. I'm a PhD candidate in Molecular Biology and Biochemistry working in cancer genomics at Simon Fraser University in the Vancouver area. If the na…
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We need examples of the types of experiments and queries which are going to be executed against `data-refinery` data.
These examples should include the perspectives from bioinformaticist, bench re…
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Most Affymetrix URLs are broken since now moved to https://www.thermofisher.com/.
It looks like they're still going to call it Affymetrix Arrays, cf. https://www.thermofisher.com/us/en/home/life-sc…
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From the file in issue #7 [MorphMap_gene_gene_scoring_data_with_CRISPR.xlsx](https://github.com/broadinstitute/2023_12_JUMP_data_only_vignettes/files/13844874/MorphMap_gene_gene_scoring_data_with_CRI…
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Configuration file: db_main.toml
Description: miRDB is an online database for miRNA target prediction and functional annotations.
```toml
[db_mirdb]
source_url = "http://mirdb.org/download/miRDB…
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Hi all,
I've been testing the use of cell2cell and MOFA within Liana and was wondering if there was a way to use the ligand-receptor information from the spatial bivariate vignette instead of rank…