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As developers, we want to know how popular Toil is, who is using it, and how much they are using it.
Having these statistics would let us show what the dominant use cases are (are people still using …
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This error appears to be similar to #1466
After running for a few weeks on ~50 mammalian fastas from NCBI, cactus crashes with two seemingly related errors from a bunch of toil jobs. I'm wondering…
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# Expected behaviour
At least according to the documentation, generic [toil utilties](https://toil.readthedocs.io/en/latest/running/utils.html) don't require cluster utilities. The command `toil cl…
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When using `toil-cwl-runner` it seems like it always uses `deep_listing` when files or directories are mounted for running within Docker or Singularity.
If I try to add [LoadListingRequirement](https…
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It seems that the specified value for defaultMemory is being overridden by the default value of 1GiB. Below is the command I used to run my workflow
```
toil-cwl-runner --outdir outdir_toil --jobSto…
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cat Bnanew_cactusv2.9.0_69.err
[2024-10-16T21:35:18+0800] [MainThread] [I] [toil.statsAndLogging] Enabling realtime logging in Toil
[2024-10-16T21:35:18+0800] [MainThread] [W] [toil.lib.humanize] De…
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The location of the coordination directory can be overridden by setting the environment variable `TOIL_COORDINATION_DIR_OVERRIDE`. However, the line where the setting should be applied, https://github…
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I had an alignment of 5 large chromosomes that terminated apparently die to writing a file that was too large (1.1 Tb). We are able to write files larger than this on the disks we are using so I want…
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Frequently we face situations when we change tox.ini in contrib (e.g., adding a new env or instrumentation or fixing a env name) we are required to manually update workflows in core as well (we need t…
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Hi All - having many jobs fail with this type of error, which seems to indicated perhaps something about a poorly formatted fasta file? One issue is that I can't seem to find the offending file `GCF_0…