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Hi, I am trying to run the sequences section of Trinotate but run into an error with the tmhmmv2 command:
```
[Wed Sep 11 15:47:29 2024] Running CMD: tmhmm --short /data/putnamlab/dbecks/Heatwave_…
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Can MaSuRCA be used for transcript assembly?
Thanks very much!
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I was wondering if you have experience with the following.
We processed various RNA-seq datasets with rMATS and after some downstream filtering and cleanup we selected a number of relevant events. …
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Hi, we're trying to use reads to assemble transcripts < 100 bp. We need the short contigs.
getting error:
sorry, min contig length set at 50 is below our imposed threshold of 100 and might lead to…
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Hi,
I'm having issue with checkGTF when running on gtf file dowloaded on Genbank database :
Here the GTF file :
```
#gtf-version 2.2
#!genome-build ASM3821986v1
#!genome-build-accession NCBI…
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I noticed that VEP 112 predicts an opposite consequence as compared to previous versions for certain insertions (rare cases). It predicts `inframe_insertion,stop_retained_variant` in cases where `fram…
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The current UI is traditional and modal, with buttons such as `Players` `Setup Game` and `Chat` opening subsidiary dialogs. The playing surface is always showing, even before a leader is determined, …
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youtube change structure so pytube no more compatible
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Why does a transcript sequence assembled by Trinity.fasta have many stop codons in the middle?
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**Describe the bug**
There is something fishy with `NM_030582.4`. Take, e.g., this deletion that maps to this transcript: [`NC_000021.8:g.46924426_46924427del`](https://variantvalidator.org/service/v…