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### Description of the bug
Hello,
Hope you are doing well! I'm wondering how to take advantage of the transcript length feature (https://github.com/nf-core/differentialabundance/pull/203) when us…
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Hi,
We (@zzare-umd, @NPSDC, and I) are trying to do some analysis of different transcript identification and quantification tools using the benchmarking data you're providing through this project…
rob-p updated
2 weeks ago
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Thank you for the great tool.
I am wondering if there is anyway to generate a Fasta based on the gene fusion output. I would like to quantify TPMs with Salmon/Kallisto which require a Fasta version…
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Hello, I have a single-cell transcript matrix (count/tpm) based on isoquant quantification. I used the count matrix for clustering and got 2 populations. You need to use isoformswithanalysis to analyz…
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Hello,
Thank you for developing these suite of tools - I'm very interested in leveraging the piscem map-bulk and piscem-infer workflow to process some joint host-metagenomic sequencing data, and am h…
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Hi, Thanks for developing such a nice and easy to use tool.
I am currently analyzing a bunch of ONT long-read samples and trying to map them using isoquant.
I have two different cell lines Nal…
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Hello,
Thanks so much for developing this tool, I find it quite easy to use.
I'm wondering what's causing duplicated transcripts (identical coordinates, different transcript id) to have differen…
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### Ask away!
Hi! I have a quick question. I've read several post that people have their processes stuck specifically at stringtie step for large input, and I've encounter the same. Specifically, it …
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Hello!
Is it possible to tell Kallisto that two or more reads originate from the same transcript? I don't want these to be double counted.
Thanks!
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Dear Salmon Team,
Not sure if this message should go here or on the google group, sorry if it shouldn't go here.
I am trying to analyse meta-transcriptome RNAseq data to obtain genes expressio…