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Hi,
I want to generate a transcription factor scatter plot. I noticed that in the tutorial, the TFs are labeled with their "short" name.
![HINT_FC_TF_Activity](https://github.com/CostaLab/reg-gen…
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The transcription factor (TF) gene symbols in the recommended list to be used with pySCENIC (https://resources.aertslab.org/cistarget/tf_lists/allTFs_hg38.txt) include some genes that are assessed to …
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### Description of feature
Hi, this is a really useful tool. A simple but useful addition would be to annotate whether a gene/transcript is a Transcription Factor or not.
At the moment I do this u…
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I've been experimenting with the distil whisper models as an alternative to the standard whisper models. While I was able to successfully integrate the distil models, I'm experiencing some issues with…
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When I try to search for all DNA-binding transcription factors
this annotation is the first in the list
URS00001B341F_9606 | Homo sapiens (human) hsa-miR-27a-5p | | negative regulation of NF-k…
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Can use 2022 jaspar binding site dataset
http://hgdownload.soe.ucsc.edu/gbdb/hg38/jaspar/
https://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg38&g=jaspar
https://jaspar.genereg.net/about/
It may b…
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> ... transcription factor motif analysis was carried out with the FIMO package, with a p-value threshold of 0.001. A total of 614 human transcription factor binding motifs from the HOCOMOCO database …
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**Hello Scenic developers,
I wanted to express my gratitude for creating such an amazing tool. I've used SCENIC to analyze single-cell data that we're interested in incorporating into our Nextflow …
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@JABelfiore please review
**GABAergic neuron of the anterior substantia nigra pars reticulata**
**definition:**
a GABAergic interneuron that has its soma in the anterior section of the substant…