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Hi! Many thanks for your work it really helps me !
I have some issues with rRNA & tRNA annotation, in result file some rnas overlap with
with genes. Did you solve it?
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Hi,
I'm trying to use MitoHiFi to assemble a multi-chromosome plant mitochondrial genome (though running the pipeline on individual chromosomes at a time). I'm using a singularity instance built fr…
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tRNAs and mitochondrial RNAs can make up a large proportion of mapped reads and thus bias the normalization and differential gene expression procedure.
For example: "tRNA genes and genes covered b…
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Hi,
I tried assembling the mitogenome of my insect species using MitoZ. The final assembly is not circular, with a size of 15,442 kb. Additionally, the following genes are missing:
l-rRNA
tRNA-…
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Hi Marcela!
I am trying to run MitHiFi with the testing data, the log file shows the pipeline is done, but no files were written to my working directory except for output files (.nhr, .nin, .nsq) fr…
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**UniProt UniRule (ID and label):**
[UR000160875](https://www.uniprot.org/unirule/UR000160875)
**Sequences with problematic annotation (ID + gene/protein name):**
pombe https://www.pombase.or…
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Hi! Thanks for the nice work!
Im wondering how exactly the summary statistics are calculated for the `id.txt` output file. I ran bakta on some paratuberculosis assemblies and when I check the summa…
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* **PTHR ID & PTN node:**
PTN000385050 (PTHR15004)
* **Sequences with problematic annotation (ID + gene/protein name):**
Fly GatC (FBgn0064115)
Fly GatA (FBgn0260779)
Fly GatB (FBgn0039153)
…
sjm41 updated
1 month ago
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## Data for testing
```git
an
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Hi there,
First off, thank you so much for making this script! I'm trying to incorporate filtered tRNAScanSE results into my genome annotation. However, the results from this script are giving me s…