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Hi, everyone:
I am running docker/singularity version of MitoHiFi with apptainer as:
`apptainer run -C -B /home -B /project -B /scratch -W ${SLURM_TMPDIR} mitohifi.sif python3 /opt/MitoHiFi/src/…
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Hi, everyone:
I am running docker/singularity version of MitoHiFi with apptainer as:
`apptainer run -C -B /home -B /project -B /scratch -W ${SLURM_TMPDIR} mitohifi.sif python3 /opt/MitoHiFi/src/…
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* **PTHR ID & PTN node:**
ALANYL-TRNA SYNTHETASE (PTHR11777)
PTN000206953
* **Sequences with problematic annotation (ID + gene/protein name):**
FBgn0027094 AlaRS
* **Type of Issue: Erroneous sou…
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Hi! Many thanks for your work it really helps me !
I have some issues with rRNA & tRNA annotation, in result file some rnas overlap with
with genes. Did you solve it?
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* **PTHR ID & PTN node:**
* **Sequences with problematic annotation (ID + gene/protein name):**
https://www.pombase.org/gene/SPBC4B4.04
* **Type of Issue: Erroneous source or erroneous propag…
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Hi,
I'm trying to use MitoHiFi to assemble a multi-chromosome plant mitochondrial genome (though running the pipeline on individual chromosomes at a time). I'm using a singularity instance built fr…
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This issue illustrates how NCBI Datasets API can be used to generates JSON blobs necessary for rendering filament pages (https://github.com/galaxyproject/brc-analytics/issues/130).
## Linked Ticket…
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tRNAs and mitochondrial RNAs can make up a large proportion of mapped reads and thus bias the normalization and differential gene expression procedure.
For example: "tRNA genes and genes covered b…
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I have installed bakta using the following command:
```
mamba create -n bakta -c conda-forge -c bioconda bakta
```
And the database was downloaded using the following command:
```
bakta_db downl…
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Differences between GOC and GOA files
GOC file: snapshot from 2024-11-04T20:23
GOA file: [GOA ftp](https://ftp.ebi.ac.uk/pub/contrib/goa/panther_proteomes/ ), file generated 2024-10-08 11:09
Fil…