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A bunch of feature requests for the Alpha Shapes packages from @mglisse.
- `filtration_with_alpha_values` for 2D alpha shapes.
- 2D/3D: functions to get the filtration value of a simplex (i.e. the…
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### Affected tool(s) or class(es)
VariantFiltration
### Affected version(s)
Master 2021-01 onwards.
### Description
VariantFiltration's --invalidate-previous-filters prevent any output…
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Hey Brent,
Long time gemini user, and setting up slivar for my group. We focus largely on singletons and used gemini filters like num_het, num_hom_alt to capture variants that are present in multip…
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Per Tom's suggestion, we really should take a pass through the naming of files through the variant detection and filtration steps to add some consistency
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**Is your feature request related to a problem? Please describe.**
We need to create a minimal cancer variant calling pipeline use case setup here
- https://github.com/bihealth/snappy-use-case-can…
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**Is your feature request related to a problem? Please describe.**
The experimental SV filtration is good. But it could be better! Users report that the representation of variants is not intuitiv…
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**Is your feature request related to a problem? Please describe.**
N/A
**Describe the solution you'd like**
N/A
**Describe alternatives you've considered**
N/A
**Additional context**
Inte…
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**Is your feature request related to a problem? Please describe.**
Currently certain settings are set site wide, project wide or per user. This is often an issue, as in different scenarious configura…
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**Is your feature request related to a problem? Please describe.**
In a validation of the GMS Lymphoid panel there's been a few variants in the reference samples that were filtered out in the VCF d…
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hi, professor,
thanks for your hard working, is this suitable for somatic filter?