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Hi. I attemps to identify the viral entities from a group of the bacterial and archaeal genomes deposited in GTDB.
Identification of viral sequences from GTDB using Genomad exhibited lots of viral …
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Related to https://github.com/nextstrain/private/issues/102 and https://github.com/nextstrain/pathogen-repo-guide/issues/50
Writing out current methods for ingesting segmented viruses. These are sl…
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Hi,
I hope this message finds you well.
I am currently using Genomad for analyzing a dataset of 39,910 sequences. However, I’ve noticed discrepancies in the output files that I need clarificatio…
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https://expose-news.com/2024/09/06/moderna-confirms-mrna-covid-vaccines-cause-cancer/
Moderna confirms mRNA COVID Vaccines cause Cancer
The Exposé on September 6, 2024
> **Moderna ADMITS That DNA…
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## Summary:
In the old `pyani` we used _Blochmannia_ genome example datasets (among other things), and moving to `pyani-plus` gives us an opportunity to update our choices to reduce test run time a…
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Collection of all available sequences for pathogenic and non pathogenic HCovs
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I am trying to run this but it has been running for over a week on the iqtree step. Is there a way to speed that up? It is running on a 64 core machine, but I see that iqtree decided that 2 cores was …
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Hi,
I have downloaded the centrifuge correctly and I have all the taxonomy files, including bacteria, viruses, archaea, fungi, and mammalian. I have a prevalence of bacterial DNA in my samples, ho…
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Hi Antonio,
I had a question about calibrated aggregated classification scores output by geNomad. If I run a metagenome assembly through genomad, would it be appropriate to use the calibrated aggre…
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**Name of the dataset**
GloBI indexed geospatial-temporal virus host interactions from virus sequences in NCBI Virus project. Includes: sequence reference, pmid reference (if available), locality, h…