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#### What analysis module should be updated and why?
molecular subtyping LGAT
#### What changes need to be made? Please provide enough detail for another participant to make the update.
Ens…
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[Slides from September 9 update are here.](https://docs.google.com/presentation/d/1B8ApOuedv3lUgZoRRgL_0LiPd4AcBVCXpQ_6Uc7-A6g/edit#slide=id.g2f2ef603ad3_0_0)
**Top priority, to do week of Septembe…
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When coming from homepage and clicking on Ras/RAF in CRC the remove track button does not work on first try
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For mutations data it is currently listed as NS (not sequenced) instead of NP (not profiled), but for CNA and SV it shows NP. Not profiled and not sequenced are synonyms. See this [link](https://www.c…
inodb updated
2 months ago
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**Background**:
Different cancers have different mutation burdens. One nice way to visualize them is the so-called hamburger plot. In the figure below as discribed in [this paper](http://www.natur…
jjgao updated
4 years ago
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Collaborators have asked if we could implement a module for performing differential analysis.
After speaking with Dan T., we believe that we can do so in the existing application without bogging t…
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User reported: https://groups.google.com/u/1/g/cbioportal/c/T-QlXI66WRU
Querying for TERT:DRIVER in GENIE can result in an alteration frequency >100% (see Desmoplastic Melanoma here: https://genie.…
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Data visualization could be done especially on the `tb-profiler` data based on the following fields
- Lineage
- Resistance status
- Number of mutations
etc
From the `VCF` files, you could thi…
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This issue is for integrating and visualizing clonal hematopoiesis mutations into cBioPortal. From [Ptashkin et al, 2018](https://www.ncbi.nlm.nih.gov/pubmed/29872864): "Clonal hematopoiesis (CH) is t…
jjgao updated
4 years ago
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**Background**:
* cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a…