-
Hello,
I've been trying to use wgd V2 to calculate a Ks peak
I've taken a subset of my CDS (~3K sequences)
When I run
```
wgd dmd subset.fasta
```
I get:
![Screenshot 2024-06-25 at…
-
Like the Title says. (Debian latest Stable 12.5)
1) Follow instructions, check requirements from https://github.com/donaldzou/WGDashboard
After ./wgd.sh start :
```
user@wireguard:~/wgdashb…
-
root@mypc:~/wgd/src# ./wgd.sh start
------------------------------------------------------------
| Starting WGDashboard with Gunicorn in the background. |
Failed to read config file: /root/wgd/s…
-
Hello, I was exploring this script https://github.com/RCollins13/WGD/blob/master/bin/scoreDosageBiases.R as I would like to annotate my WGS data with dosage bias scores.
I couldn't find the cov.fi…
-
Hello Jefferson,
My analysis includes my species of interest plus six other species. In my "comparisons_4DTv.txt", I listed single species as well as pairs of species, as follows:
``
mySpecies
…
-
Ideally, we should account for WGD (baseline is 4 copies) when analyzing hyperploid tumors (e.g. TNBC5), which should lead to better model fit and prediction stability
-
**Describe The Problem**
When going to http://:10086 the message is displayed: Internal Server Error
The server encountered an internal error and was unable to complete your request. Either the serv…
-
Hi, reading the WGD readme I read that the 6F adjustment metadata matrices are available upon request.
Could someone please provide me with that file for hg19?
I would like to annotate my WGS wi…
-
**Describe The Problem**
I have installed the Python dependencies and the dashboard following the steps and when I start it I cannot access the web server (ERR_CONNECTION_REFUSED). The logs folder is…
PJ289 updated
8 months ago
-
Hi! after the last time I ran the update command (./wgd.sh update), all worked fine. However, I went to do so today to see if there was a new subversion and literally the file is missing. the page …