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Currently, `PatchWSIDataset` generates patches based on pre-defined locations. In digital pathology use cases, there is a need for generating such patches randomly from all over the whole slide image.…
drbeh updated
2 years ago
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How can I get the structure of the whole slide image dataset as you prove. Now i have the part of datasets of TCGA, and they are in the format of SVS. How i can get this photo of each patches. Than…
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**Describe the bug**
When running inference, `AbstractWriterCallback` loops over all datasets to construct the `_dataset_size` dict. This opens a slide from cache several times, which can take 1-3 se…
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Dear Scimap Team,
Thank you for your exceptional work in advancing spatial-omics biology. I am currently facing a challenge with integrating two different scales of CODEX quantification data proc…
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Hi Daniel - I have created the attached force directed graph but interactions with Power BI are currently limited.
![Thumb](https://github.com/deneb-viz/deneb/assets/86846675/aac63326-0e7c-47a8-b7…
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### What would you like to see added in fMRIPost-Rapidtide?
@bbfrederick WDYT about including a step after the rapidtide part that measures and plots FC inflation from the preprocessed, confound-deno…
tsalo updated
21 hours ago
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> Also, regarding multidimensionality. Is time lapse handled somehow? I was just looking at one big INCarta folder, with 4D data, >90000 files, and all time-lapse steps are in the same folder (t1... t…
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I'm sat in your AMS talk, and this package looks really cool!
### Is your feature request related to a problem?
I made the [xarray-datatree package](https://github.com/xarray-contrib/datatree), …
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Hi,
I ran the patch creator script to generate h5 files. I then ran the 'create_features_fp.py' script to obtain feature vectors.
However, I get the following error:
Traceback (most recent call l…
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Hi Mart,
I hope all is well. I am trying to perform whole-slide inference on a WSI. I want to use the Patch iterator class so that I can extract adjacent patches in an ordered fashion. I also want …