NKI-AI ahcore issues - Githubissues

NKI-AI / ahcore

Ahcore is the AI for Oncology core computational pathology toolkit

Apache License 2.0

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issues

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Implement better tile aggregation

#98 AjeyPaiK closed 6 days ago
0
Implement a GaussianBlur in the readers during tile stitching.

#97 AjeyPaiK opened 1 week ago
1
Training crashes after many successful epochs. (Too many open file handlers)

#96 AjeyPaiK closed 1 week ago
2
Implement `ignore_index` in metrics

#95 AjeyPaiK opened 2 weeks ago
0
Add an `ignore_index` parameter to the metric factory

#94 AjeyPaiK opened 2 weeks ago
0
Feature/slideimage backend

#93 jonasteuwen closed 2 weeks ago
0
ahcore prediction doesn't end properly

#92 AjeyPaiK opened 3 weeks ago
0
Repair cli tiling pipeline

#91 VanessaBotha closed 3 weeks ago
0
Improve DlupDataModule

#90 VanessaBotha opened 1 month ago
0
Update/dlup 0.4 compatibility

#89 EricMarcus-ai closed 1 month ago
0
improvement: reduce setup time of AbstractWriterCallback

#88 YoniSchirris opened 1 month ago
3
feat/on-the-fly inference

#87 YoniSchirris opened 1 month ago
1
Change signature for read_region

#86 jonasteuwen closed 3 weeks ago
0
Implement datasets for outputting WSI feature embeddings

#85 AjeyPaiK opened 1 month ago
0
AhcoreJitModel extended for specific inference cases.

#84 AjeyPaiK closed 2 weeks ago
1
Feature/FMIntegration

#83 AjeyPaiK closed 1 month ago
0
AhcoreJitModel extended for specific jit compiled inference use cases like extracting features from foundation models

#82 AjeyPaiK closed 1 month ago
0
ZarrWriter is unable to access keywords from model output dictionary of foundational models

#81 AjeyPaiK closed 2 weeks ago
0
Feature/Vector database

#80 EricMarcus-ai closed 1 week ago
0
fixes arguments and also copies the folder for mrxs files

#79 moerlemans opened 3 months ago
0
Update README.rst

#78 jonasteuwen closed 3 weeks ago
0
Implement ZarrFileWriter

#77 jonasteuwen closed 2 months ago
0
Implement AhcoreJitModel

#76 AjeyPaiK closed 3 months ago
0
Fix/ci

#75 EricMarcus-ai closed 3 months ago
0
Ensure the WsiMetricCallback works again

#74 jonasteuwen closed 3 months ago
0
Create database on the fly for inference

#73 jonasteuwen opened 3 months ago
2
WsiMetrics do not work anymore after MultiGPU

#72 jonasteuwen closed 3 months ago
0
Add multigpu capability to both train, test and validation

#71 jonasteuwen closed 3 months ago
0
CLI tool for copying datasets does not copy the folder that belongs with an .mrxs file

#70 moerlemans opened 5 months ago
0
Feature/h5 tile feature writer

#69 AjeyPaiK closed 3 months ago
1
CLI tool has wrong name for args

#68 moerlemans opened 5 months ago
0
Integrate a feature extractor from open source foundation models. (Eg: one avaliable from Owkin into the model zoo.)

#67 AjeyPaiK opened 5 months ago
0
Implement a callback to store the feature vectors extracted by the foundation model.

#66 AjeyPaiK closed 3 months ago
1
Implement AhcoreJITModel, H5TileFeatureWriter

#65 AjeyPaiK closed 3 months ago
2
Implement classification models for downstream tasks that uses the extracted feature vectors. (Eg: DeepMIL)

#64 AjeyPaiK opened 5 months ago
0
Implement a dataset that yields feature vectors reading H5 files.

#63 AjeyPaiK opened 5 months ago
0
Implement a classification pipeline

#62 AjeyPaiK opened 5 months ago
0
Command-line interface

#61 jonasteuwen opened 5 months ago
0
Fix CI/CD

#59 EricMarcus-ai closed 5 months ago
0
Fixes #57

#58 AjeyPaiK closed 5 months ago
0
Wrong typing in the initialization of H5 callback

#57 AjeyPaiK closed 5 months ago
0
Add grid parameter to H5FileImageWriter constructor

#56 EricMarcus-ai closed 5 months ago
0
Wrong initialization H5 writer Grid during validation

#55 EricMarcus-ai closed 5 months ago
0
H5 Writer for feature vectors.

#54 AjeyPaiK closed 5 months ago
1
Extend `WriteH5Callback` to save feature vectors.

#53 AjeyPaiK closed 5 months ago
0
Set precision while writing H5 files.

#52 AjeyPaiK closed 6 months ago
1
Dimension in h5writer is wrong

#51 moerlemans closed 6 months ago
0
Reduce precision of tensors while H5 Writing.

#50 AjeyPaiK closed 6 months ago
0
Added colormaps to tiffwriter.

#49 AjeyPaiK closed 6 months ago
0
CCITTFAX4 compression is not supported by tiffile in upstream dlup.

#48 AjeyPaiK closed 6 months ago
1