NKI-AI ahcore issues - Githubissues

NKI-AI / ahcore

Ahcore is the AI for Oncology core computational pathology toolkit

Apache License 2.0

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Fix CI/CD

#59 EricMarcus-ai closed 7 months ago
0
Fixes #57

#58 AjeyPaiK closed 7 months ago
0
Wrong typing in the initialization of H5 callback

#57 AjeyPaiK closed 7 months ago
0
Add grid parameter to H5FileImageWriter constructor

#56 EricMarcus-ai closed 7 months ago
0
Wrong initialization H5 writer Grid during validation

#55 EricMarcus-ai closed 7 months ago
0
H5 Writer for feature vectors.

#54 AjeyPaiK closed 7 months ago
1
Extend `WriteH5Callback` to save feature vectors.

#53 AjeyPaiK closed 7 months ago
0
Set precision while writing H5 files.

#52 AjeyPaiK closed 7 months ago
1
Dimension in h5writer is wrong

#51 moerlemans closed 7 months ago
0
Reduce precision of tensors while H5 Writing.

#50 AjeyPaiK closed 7 months ago
0
Added colormaps to tiffwriter.

#49 AjeyPaiK closed 8 months ago
0
CCITTFAX4 compression is not supported by tiffile in upstream dlup.

#48 AjeyPaiK closed 7 months ago
1
Add an optional parameter `colormap` to `WriteTiffCallback`.

#47 AjeyPaiK closed 8 months ago
0
Proposal for new writer callback

#46 jonasteuwen closed 5 months ago
1
Rework callbacks

#45 jonasteuwen closed 8 months ago
0
Update dlup version

#44 jonasteuwen closed 9 months ago
0
H5FileImageWriter metadata is wrong

#43 jonasteuwen closed 8 months ago
1
h5ImageReader needs to read ICC profiles

#42 jonasteuwen opened 9 months ago
0
Implement {#23} - Improved the logic in the consume step within H5FileImageWriter.

#41 AjeyPaiK closed 8 months ago
0
Implement {#18}

#40 AjeyPaiK closed 7 months ago
0
Insert proper ROI into sample when None

#39 EricMarcus-ai closed 9 months ago
0
Case with no ROI not handled properly in WSImetrics

#38 EricMarcus-ai closed 9 months ago
0
Fix for OOM during inference

#37 AjeyPaiK closed 9 months ago
0
Bugfix/include image labels from record

#36 BPdeRooij closed 9 months ago
0
Image labels are not included in `datasets_from_data_description`

#35 BPdeRooij closed 9 months ago
0
add DARWIN_JSON as reader option

#34 BPdeRooij closed 9 months ago
0
Support of Darwin annotation reading

#33 BPdeRooij closed 9 months ago
0
Intertwine computation of metrics and tiff output in callbacks

#32 jonasteuwen opened 9 months ago
0
Update setup.py for new dlup version

#31 jonasteuwen closed 9 months ago
0
Add drop_last parameter to WsiBatchSamplerPredict

#30 EricMarcus-ai closed 9 months ago
3
limit_bounds can always be set to True with upstream dlup.

#29 jonasteuwen closed 9 months ago
0
fixes remap labels from raising an error to just not using them

#28 moerlemans closed 9 months ago
0
Added check for none roi, as the if statement is redundant otherwise

#27 moerlemans closed 9 months ago
0
None remap labels throws an error in callbacks even though they are optional

#26 moerlemans closed 9 months ago
0
Multi GPU support

#25 EricMarcus-ai closed 5 months ago
2
PreTransform and Metric Factories

#24 EricMarcus-ai opened 9 months ago
0
Make `H5FileImageWriter` efficient

#23 AjeyPaiK closed 8 months ago
0
Add color profile to training

#22 jonasteuwen closed 8 months ago
1
If use_roi is set to False, the pretransform will still try to use an roi because of the initialization from dlup

#21 moerlemans closed 9 months ago
2
Update dlup to v0.3.32

#20 jonasteuwen closed 9 months ago
0
OOM error during inference.

#19 AjeyPaiK closed 9 months ago
12
Can we have a callback that will handle h5 file deletion after they've been used?

#18 AjeyPaiK opened 9 months ago
3
Fix H5FileImageWriter Callback

#17 AjeyPaiK closed 8 months ago
4
The H5 Writer callback doesn't take into account offset induced by `limit_bounds`

#16 AjeyPaiK closed 7 months ago
1
Add version tags to configuration

#15 jonasteuwen opened 9 months ago
0
Improve database models

#14 VanessaBotha closed 9 months ago
1
Scaling of geojson annotations not supported while dataloading.

#13 AjeyPaiK closed 8 months ago
1
Bugfix/hed color augmentation fix

#12 BPdeRooij closed 10 months ago
0
HED augmentation is not applied correctly

#11 jonasteuwen closed 10 months ago
0
Bugfix/mps acceleration support

#10 BPdeRooij closed 10 months ago
1

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