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NKI-AI
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ahcore
Ahcore is the AI for Oncology core computational pathology toolkit
Apache License 2.0
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Fix CI/CD
#59
EricMarcus-ai
closed
7 months ago
0
Fixes #57
#58
AjeyPaiK
closed
7 months ago
0
Wrong typing in the initialization of H5 callback
#57
AjeyPaiK
closed
7 months ago
0
Add grid parameter to H5FileImageWriter constructor
#56
EricMarcus-ai
closed
7 months ago
0
Wrong initialization H5 writer Grid during validation
#55
EricMarcus-ai
closed
7 months ago
0
H5 Writer for feature vectors.
#54
AjeyPaiK
closed
7 months ago
1
Extend `WriteH5Callback` to save feature vectors.
#53
AjeyPaiK
closed
7 months ago
0
Set precision while writing H5 files.
#52
AjeyPaiK
closed
7 months ago
1
Dimension in h5writer is wrong
#51
moerlemans
closed
7 months ago
0
Reduce precision of tensors while H5 Writing.
#50
AjeyPaiK
closed
7 months ago
0
Added colormaps to tiffwriter.
#49
AjeyPaiK
closed
8 months ago
0
CCITTFAX4 compression is not supported by tiffile in upstream dlup.
#48
AjeyPaiK
closed
7 months ago
1
Add an optional parameter `colormap` to `WriteTiffCallback`.
#47
AjeyPaiK
closed
8 months ago
0
Proposal for new writer callback
#46
jonasteuwen
closed
5 months ago
1
Rework callbacks
#45
jonasteuwen
closed
8 months ago
0
Update dlup version
#44
jonasteuwen
closed
9 months ago
0
H5FileImageWriter metadata is wrong
#43
jonasteuwen
closed
8 months ago
1
h5ImageReader needs to read ICC profiles
#42
jonasteuwen
opened
9 months ago
0
Implement {#23} - Improved the logic in the consume step within H5FileImageWriter.
#41
AjeyPaiK
closed
8 months ago
0
Implement {#18}
#40
AjeyPaiK
closed
7 months ago
0
Insert proper ROI into sample when None
#39
EricMarcus-ai
closed
9 months ago
0
Case with no ROI not handled properly in WSImetrics
#38
EricMarcus-ai
closed
9 months ago
0
Fix for OOM during inference
#37
AjeyPaiK
closed
9 months ago
0
Bugfix/include image labels from record
#36
BPdeRooij
closed
9 months ago
0
Image labels are not included in `datasets_from_data_description`
#35
BPdeRooij
closed
9 months ago
0
add DARWIN_JSON as reader option
#34
BPdeRooij
closed
9 months ago
0
Support of Darwin annotation reading
#33
BPdeRooij
closed
9 months ago
0
Intertwine computation of metrics and tiff output in callbacks
#32
jonasteuwen
opened
9 months ago
0
Update setup.py for new dlup version
#31
jonasteuwen
closed
9 months ago
0
Add drop_last parameter to WsiBatchSamplerPredict
#30
EricMarcus-ai
closed
9 months ago
3
limit_bounds can always be set to True with upstream dlup.
#29
jonasteuwen
closed
9 months ago
0
fixes remap labels from raising an error to just not using them
#28
moerlemans
closed
9 months ago
0
Added check for none roi, as the if statement is redundant otherwise
#27
moerlemans
closed
9 months ago
0
None remap labels throws an error in callbacks even though they are optional
#26
moerlemans
closed
9 months ago
0
Multi GPU support
#25
EricMarcus-ai
closed
5 months ago
2
PreTransform and Metric Factories
#24
EricMarcus-ai
opened
9 months ago
0
Make `H5FileImageWriter` efficient
#23
AjeyPaiK
closed
8 months ago
0
Add color profile to training
#22
jonasteuwen
closed
8 months ago
1
If use_roi is set to False, the pretransform will still try to use an roi because of the initialization from dlup
#21
moerlemans
closed
9 months ago
2
Update dlup to v0.3.32
#20
jonasteuwen
closed
9 months ago
0
OOM error during inference.
#19
AjeyPaiK
closed
9 months ago
12
Can we have a callback that will handle h5 file deletion after they've been used?
#18
AjeyPaiK
opened
9 months ago
3
Fix H5FileImageWriter Callback
#17
AjeyPaiK
closed
8 months ago
4
The H5 Writer callback doesn't take into account offset induced by `limit_bounds`
#16
AjeyPaiK
closed
7 months ago
1
Add version tags to configuration
#15
jonasteuwen
opened
9 months ago
0
Improve database models
#14
VanessaBotha
closed
9 months ago
1
Scaling of geojson annotations not supported while dataloading.
#13
AjeyPaiK
closed
8 months ago
1
Bugfix/hed color augmentation fix
#12
BPdeRooij
closed
10 months ago
0
HED augmentation is not applied correctly
#11
jonasteuwen
closed
10 months ago
0
Bugfix/mps acceleration support
#10
BPdeRooij
closed
10 months ago
1
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