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Dear Chandler,
thank you for you response and cant wait for the new update. I have the problem that when I run a code to batch register and merge slides after it finishes with lets say Slide 1 it d…
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**Interop Contac**t: Jonas Almeida
Active in 2021: Active
We have developed a tile server to decouple image analysis from its storage [PMID1234, demo at https://episphere.github.io/svs]. This is now…
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**What is your question?**
Hello,
I'm pretty new to this topic, but I was wondering whether this library can be used to process wsi.
I would need to join, for example, different .svs files into one…
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Currently i am working on digital microscope. I have to scan whole slide and then stitch them together to create a single image. i am scanning the slide in snake manner as shown in the attachment. Cur…
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Hi,
Thanks for developing this useful tool! I’m eager to apply it in our research.
I am encountering what I believe is an out of memory crash when processing a large digital pathology whole slide i…
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Hi,
I have 10 images, each with hematoxylin and a DAB staining for different markers on the same slide that were stained sequentially. Now I would like to align and register the images based on the h…
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- [ ] implement module which reads WSI in tiles with settings for tile sizes & overlap
See: 266 openslide library for loading whole-slide images
https://www.youtube.com/watch?v=QntLBvUZR5c
267 P…
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DICOM WSI is being encouraged for use as a standard format for WSI in order to leverage existing clinical and research archives and to propagate identifying and descriptive metadata (subject, specimen…
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Hello,
Thank you for sharing the code for such a great project.
I am getting embeddings that are not meaningful and I wanted to check if I might be doing something that is not what the model is e…
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**Describe the bug**
When running inference, `AbstractWriterCallback` loops over all datasets to construct the `_dataset_size` dict. This opens a slide from cache several times, which can take 1-3 se…