AllenInstitute segmentation-labeling-app issues

AllenInstitute / segmentation-labeling-app

Data pipeline and UI for human labeling of putative ROIs from 2p cell segmentations

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allow masks larger than crop size

#131 aamster closed 2 years ago
1
Transform_pipeline modifications

#130 aamster closed 2 years ago
0
Feature/transform skip movies

#129 aamster closed 2 years ago
0
Only decode byte string if possible (pg8000 update)

#128 aamster closed 3 years ago
0
annotations for superficial Slc

#127 djkapner closed 3 years ago
1
adds codecov config to warn only

#126 djkapner closed 4 years ago
1
Add ability to run SLAPP transform_pipeline on production data

#125 njmei closed 3 years ago
1
modify inputs for manifest creation

#124 djkapner closed 3 years ago
0
fixes compute_majority, adds test, adds docstring

#123 djkapner closed 4 years ago
1
Bugfix/compute majority test

#122 djkapner closed 4 years ago
1
Feature/merge sage maker outputs

#121 djkapner closed 4 years ago
2
add test and update post-annotation lambda

#120 djkapner closed 4 years ago
0
Fix incomplete ROI labels

#119 kschelonka closed 4 years ago
2
Deprecate informatics docs repo

#118 djkapner closed 4 years ago
1
generate mask threshold examples

#117 djkapner closed 4 years ago
0
Toggle view of neighboring masks

#116 wbwakeman opened 4 years ago
0
Feature/botocore upload

#115 djkapner closed 4 years ago
2
Feature/faster upload validation

#114 djkapner closed 4 years ago
1
alternate round-trip file upload check

#113 djkapner closed 4 years ago
1
uploader improvements

#112 djkapner closed 4 years ago
1
adds ThreadPool parallelization to uploader

#111 djkapner closed 4 years ago
1
Feature/multi experiment upload

#110 djkapner closed 4 years ago
2
Allow passing upload manifest file directly to LabelDataUploader

#109 kschelonka closed 4 years ago
0
extra args for projection normalization

#108 djkapner closed 4 years ago
1
writes scale with opencv, rewrites tests, saves all with imageio

#107 djkapner closed 4 years ago
4
Bug: Outline files are completely black -- Blocking Release

#106 kschelonka closed 4 years ago
1
Select and transform 1000 ROIs

#105 djkapner closed 4 years ago
0
Investigate if further compression of videos can be achieved

#103 njmei opened 4 years ago
0
Adds a scale to the bottom of images and videos

#102 pickles-bread-and-butter closed 4 years ago
6
Feature/segmentation driver file

#101 djkapner closed 4 years ago
2
Parallelize video encoding and add quality (crf) control for encoding

#100 njmei closed 4 years ago
3
Add enlarge/smallarge buttons to images

#99 kschelonka closed 4 years ago
1
Update the text caption to clarify navigator vs. trace

#98 kschelonka closed 4 years ago
0
Apply image adjustment controls to projection images (as well as video)

#97 kschelonka closed 4 years ago
0
Added verbosity to the full instructions displayed in the SMGT web app

#96 pickles-bread-and-butter closed 4 years ago
5
investigate and implement speed-up for webm creation.

#95 djkapner closed 4 years ago
1
Fix blurry video artifacts

#94 pickles-bread-and-butter closed 4 years ago
3
Update documentation for running transformation pipeline in repo README.md

#93 kschelonka opened 4 years ago
0
Add clickable expand/minimize icon to videos/images

#92 kschelonka closed 4 years ago
0
Improved keyboard support for labeling tool

#91 kschelonka opened 4 years ago
0
Fix failing 'average' strategy on video downsampling

#90 pickles-bread-and-butter opened 4 years ago
8
Change produced videos to Webm container and VP9 codec to eliminate green video problems.

#89 pickles-bread-and-butter closed 4 years ago
9
Improvements for small screens

#88 kschelonka closed 4 years ago
0
Green movie

#87 pickles-bread-and-butter closed 4 years ago
0
Feature/full size movie

#86 djkapner closed 4 years ago
0
Add motion-border filter to labeling pipeline

#85 djkapner closed 4 years ago
1
Feature/dataset selection

#84 djkapner closed 4 years ago
3
Update labeling email invite to include instruction to bookmark the login link

#83 kschelonka closed 4 years ago
1
Improvements for small-screen users

#82 kschelonka closed 4 years ago
0
Click to expand images rather than hover

#81 kschelonka closed 4 years ago
0