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AllenInstitute
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segmentation-labeling-app
Data pipeline and UI for human labeling of putative ROIs from 2p cell segmentations
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ROI Labeling Tool Nice-to-Haves
#104
kschelonka
opened
4 years ago
0
nice
#80
kschelonka
closed
4 years ago
0
Nice-to-have: Tooltip telling users to click to expand the images
#79
kschelonka
closed
4 years ago
1
Fix post-annotation lambda to properly return data
#78
kschelonka
closed
4 years ago
0
Add accompanying instructions/clarifications for tool
#77
kschelonka
closed
4 years ago
1
Investigate "green" movies
#76
wbwakeman
closed
4 years ago
15
Investigate improvements for small-screen users
#75
wbwakeman
closed
4 years ago
3
Improve navigator label
#74
wbwakeman
closed
4 years ago
0
Update text to clarify weights
#73
wbwakeman
closed
3 years ago
1
Add control to adjust all three panes
#72
wbwakeman
closed
4 years ago
0
Improve usability to view expanded/minimized static image
#71
wbwakeman
closed
4 years ago
0
Add play/pause buttons to be near trace
#70
wbwakeman
closed
4 years ago
2
Add simple ruler to indicate scale
#69
wbwakeman
closed
4 years ago
20
Feature/codecov
#68
djkapner
closed
4 years ago
0
Completed SGT test jobs are failing due to post-annotation lambda bug
#67
kschelonka
closed
4 years ago
0
Dev tweaks 2+3
#66
kschelonka
closed
4 years ago
0
Data Transform Updates + Fixes
#65
kschelonka
closed
4 years ago
2
Update UI to include full field of view movie
#64
kschelonka
closed
4 years ago
1
UI Tweaks Round 2 (dev input)
#63
kschelonka
closed
4 years ago
0
Post-Deployment UI Tweaks (dev input)
#62
kschelonka
closed
4 years ago
1
UI Tweaks + Updates
#61
kschelonka
closed
4 years ago
0
Add vertical line to trace chart that follows movie progress
#60
kschelonka
closed
4 years ago
0
UI Performance Investigation
#59
kschelonka
closed
4 years ago
0
UI Deployment Tweaks
#58
kschelonka
closed
4 years ago
1
deployment tweaks
#54
djkapner
closed
4 years ago
2
Feature/upload tweaks
#53
djkapner
closed
4 years ago
0
Expandable full field of view video (UI)
#52
kschelonka
closed
4 years ago
0
allow None for prefix
#51
djkapner
closed
4 years ago
0
switches from sqlite to postgres input for uploader
#50
djkapner
closed
4 years ago
0
Modify S3 uploader to read from postgres table
#55
djkapner
opened
4 years ago
0
Add test for pre-annotation transformation pipeline
#49
njmei
closed
4 years ago
1
Use postgres db instead of sqlite to store labeling pre-annotation pipeline output manifest
#48
njmei
closed
4 years ago
1
Update transformation pipeline to include full field of view movie
#46
kschelonka
closed
4 years ago
1
Update UI to include full field of view movie
#45
kschelonka
closed
4 years ago
1
Update deployment and clean up repo
#44
kschelonka
closed
4 years ago
2
Add test for transform_pipeline
#43
njmei
closed
4 years ago
0
Forgot to convert query_utils _connect and _select functions to methods
#42
njmei
closed
4 years ago
0
Refactor database query functionality
#41
njmei
closed
4 years ago
0
Add traces to data extracted from Suite2P
#56
djkapner
opened
4 years ago
4
Complete deployment process for Sagemaker Ground Truth app
#40
kschelonka
closed
4 years ago
0
Update transformations.py
#39
djkapner
closed
4 years ago
0
Add linting step
#38
kschelonka
closed
4 years ago
0
Feature/transform pipeline
#37
djkapner
closed
4 years ago
3
Investigate including more of the whole FOV movie
#36
wbwakeman
closed
4 years ago
1
Generate document of questions for labeling tool edge cases
#35
wbwakeman
closed
4 years ago
2
Feature/update array utils
#34
djkapner
closed
4 years ago
3
Feature/roi refactor
#33
djkapner
closed
4 years ago
0
Configure AWS codepipeline to test and deploy lambdas
#57
djkapner
opened
4 years ago
1
Update viz tools
#32
kschelonka
closed
4 years ago
0
Visualization evaluation
#31
kschelonka
closed
4 years ago
0
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