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AllenInstitute
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transcriptomic_clustering
improved clustering pipeline for transcriptomic data
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Hmba/tc latent
#131
UCDNJJ
closed
3 weeks ago
0
R vs. Python clustering comparisons.
#130
UCDNJJ
opened
8 months ago
0
Add logging information to assess RAPIDS improvements.
#129
UCDNJJ
opened
8 months ago
1
initial dockerization
#128
MatthewAitken
opened
1 year ago
0
User provided latent space
#127
UCDNJJ
opened
1 year ago
3
Fbm converter
#126
MatthewAitken
closed
2 years ago
0
Iterative Clustering Updates
#125
MatthewAitken
closed
2 years ago
0
Small refinements
#124
MatthewAitken
closed
2 years ago
0
minimize memory used by similarity
#123
MatthewAitken
closed
3 years ago
0
update install docs
#122
MatthewAitken
opened
3 years ago
0
adds missing f to log string
#121
MatthewAitken
closed
3 years ago
0
Pca filtering
#120
MatthewAitken
closed
3 years ago
0
Return de
#119
MatthewAitken
closed
3 years ago
0
Iter clust
#118
MatthewAitken
closed
3 years ago
0
Add example for selecting a subset from a backed adata
#117
sgratiy
opened
3 years ago
0
added iterative clustering wrapper
#116
santino-iannone
opened
3 years ago
0
Bugfix/adata view
#115
sgratiy
closed
3 years ago
0
Update install instructions with conda gcc commands and -p flag
#114
JakeSAI
opened
3 years ago
0
Do not allow inplace modification of argument to merge_clusters
#113
sgratiy
closed
3 years ago
0
Bugfix/non deterministic
#112
sgratiy
closed
3 years ago
1
consistent merging
#111
wbwakeman
closed
3 years ago
0
Inform users of transcriptomic clustering use
#110
wbwakeman
closed
3 years ago
0
Check why clustering not deterministic when seed is set
#109
wbwakeman
closed
3 years ago
0
Clean up the demo notebook
#108
sgratiy
closed
3 years ago
0
Bugfix/seg fault
#107
sgratiy
closed
3 years ago
0
bug/fix: update chisq unit test compatible to latest scipy with version 1.7
#106
gnayuy
closed
3 years ago
0
debug test chisq
#105
sgratiy
closed
3 years ago
1
Ignore divide by zero warning in log10 when computing de scores
#104
sgratiy
closed
3 years ago
0
Add thresholds to the demo notebook
#103
sgratiy
closed
3 years ago
0
fixes louvain_method_check missing elif
#102
MatthewAitken
closed
3 years ago
0
Bugfix/version file
#101
MatthewAitken
closed
3 years ago
1
fixes de_ebayes 0 variance issue
#100
MatthewAitken
closed
3 years ago
0
Updates merging to use de_pairs_... functions
#99
MatthewAitken
closed
3 years ago
0
Add de_pairs_chisq for computing chi-square test on all pairs
#98
gnayuy
closed
3 years ago
0
92/alternative louvain implementation
#97
JakeSAI
closed
3 years ago
0
update padj for limma de
#96
gnayuy
closed
3 years ago
0
Set up code coverage report
#95
wbwakeman
opened
3 years ago
0
Set up readthedocs
#94
wbwakeman
opened
3 years ago
0
Set up CI to run in different environments
#93
wbwakeman
opened
3 years ago
0
Implement Alternative Louvain Solution
#92
JakeSAI
closed
3 years ago
0
Update de_pair_chisq inputs: "cl_present" and "cl_means" with (clusters x genes)
#91
gnayuy
closed
3 years ago
0
draft differential expression using moderated t-test
#90
MatthewAitken
closed
3 years ago
0
GH-12 Add de score calculation from de stats
#89
sgratiy
closed
3 years ago
0
Investigate deterministic louvain clustering implementation
#88
wbwakeman
closed
3 years ago
0
Add Annoy ANN Algorithm to Forked Phenograph Code
#87
JakeSAI
closed
3 years ago
1
Make Louvain Clustering Seedable
#86
JakeSAI
closed
3 years ago
1
dataframe means in cluster means
#85
JakeSAI
closed
3 years ago
0
Merging Summary Statistics
#84
madiganz
opened
3 years ago
1
Caching of Differential Expressed Genes
#83
madiganz
opened
3 years ago
1
Add merge module
#82
madiganz
closed
3 years ago
2
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