AllenInstitute transcriptomic_clustering issues

AllenInstitute / transcriptomic_clustering

improved clustering pipeline for transcriptomic data

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Hmba/tc latent

#131 UCDNJJ closed 3 weeks ago
0
R vs. Python clustering comparisons.

#130 UCDNJJ opened 8 months ago
0
Add logging information to assess RAPIDS improvements.

#129 UCDNJJ opened 8 months ago
1
initial dockerization

#128 MatthewAitken opened 1 year ago
0
User provided latent space

#127 UCDNJJ opened 1 year ago
3
Fbm converter

#126 MatthewAitken closed 2 years ago
0
Iterative Clustering Updates

#125 MatthewAitken closed 2 years ago
0
Small refinements

#124 MatthewAitken closed 2 years ago
0
minimize memory used by similarity

#123 MatthewAitken closed 3 years ago
0
update install docs

#122 MatthewAitken opened 3 years ago
0
adds missing f to log string

#121 MatthewAitken closed 3 years ago
0
Pca filtering

#120 MatthewAitken closed 3 years ago
0
Return de

#119 MatthewAitken closed 3 years ago
0
Iter clust

#118 MatthewAitken closed 3 years ago
0
Add example for selecting a subset from a backed adata

#117 sgratiy opened 3 years ago
0
added iterative clustering wrapper

#116 santino-iannone opened 3 years ago
0
Bugfix/adata view

#115 sgratiy closed 3 years ago
0
Update install instructions with conda gcc commands and -p flag

#114 JakeSAI opened 3 years ago
0
Do not allow inplace modification of argument to merge_clusters

#113 sgratiy closed 3 years ago
0
Bugfix/non deterministic

#112 sgratiy closed 3 years ago
1
consistent merging

#111 wbwakeman closed 3 years ago
0
Inform users of transcriptomic clustering use

#110 wbwakeman closed 3 years ago
0
Check why clustering not deterministic when seed is set

#109 wbwakeman closed 3 years ago
0
Clean up the demo notebook

#108 sgratiy closed 3 years ago
0
Bugfix/seg fault

#107 sgratiy closed 3 years ago
0
bug/fix: update chisq unit test compatible to latest scipy with version 1.7

#106 gnayuy closed 3 years ago
0
debug test chisq

#105 sgratiy closed 3 years ago
1
Ignore divide by zero warning in log10 when computing de scores

#104 sgratiy closed 3 years ago
0
Add thresholds to the demo notebook

#103 sgratiy closed 3 years ago
0
fixes louvain_method_check missing elif

#102 MatthewAitken closed 3 years ago
0
Bugfix/version file

#101 MatthewAitken closed 3 years ago
1
fixes de_ebayes 0 variance issue

#100 MatthewAitken closed 3 years ago
0
Updates merging to use de_pairs_... functions

#99 MatthewAitken closed 3 years ago
0
Add de_pairs_chisq for computing chi-square test on all pairs

#98 gnayuy closed 3 years ago
0
92/alternative louvain implementation

#97 JakeSAI closed 3 years ago
0
update padj for limma de

#96 gnayuy closed 3 years ago
0
Set up code coverage report

#95 wbwakeman opened 3 years ago
0
Set up readthedocs

#94 wbwakeman opened 3 years ago
0
Set up CI to run in different environments

#93 wbwakeman opened 3 years ago
0
Implement Alternative Louvain Solution

#92 JakeSAI closed 3 years ago
0
Update de_pair_chisq inputs: "cl_present" and "cl_means" with (clusters x genes)

#91 gnayuy closed 3 years ago
0
draft differential expression using moderated t-test

#90 MatthewAitken closed 3 years ago
0
GH-12 Add de score calculation from de stats

#89 sgratiy closed 3 years ago
0
Investigate deterministic louvain clustering implementation

#88 wbwakeman closed 3 years ago
0
Add Annoy ANN Algorithm to Forked Phenograph Code

#87 JakeSAI closed 3 years ago
1
Make Louvain Clustering Seedable

#86 JakeSAI closed 3 years ago
1
dataframe means in cluster means

#85 JakeSAI closed 3 years ago
0
Merging Summary Statistics

#84 madiganz opened 3 years ago
1
Caching of Differential Expressed Genes

#83 madiganz opened 3 years ago
1
Add merge module

#82 madiganz closed 3 years ago
2