AndrewRadev protein-runway issues

AndrewRadev / protein-runway

Integrated Bioinformatics Project

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Fix bug with unclassified points

#61 AndrewRadev closed 14 hours ago
0
Generate AMSM/GeoStaS clustering from NMD trajectory

#60 AndrewRadev opened 17 hours ago
0
Generate PyMol visualization scripts

#59 emmarousseau opened 1 day ago
0
Add convex hull

#58 AndrewRadev closed 1 day ago
0
Create a class that wraps the "segmentation" file and allows modifications

#57 AndrewRadev opened 2 days ago
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Make radius configurable

#56 AndrewRadev opened 2 days ago
0
Add more colors

#55 AndrewRadev opened 2 days ago
0
Re-add MD-TASK, apply clustering with K-means on the correlation matrix

#54 AndrewRadev opened 2 days ago
0
Fix merizo segmentation by downloading PDB with secondary structure info

#53 AndrewRadev opened 2 days ago
0
Restructure UI List into two parts

#52 AndrewRadev opened 2 days ago
0
Cache amsm matrix

#51 AndrewRadev closed 2 days ago
0
Segmentation mapping file doesn't show in viewer after being selected

#50 mkrunic opened 3 days ago
1
Gzip output PDB files

#49 AndrewRadev opened 6 days ago
0
trimmed requirements.txt

#48 evgenia-polez closed 1 week ago
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Blender: Parse segmentation file, show UI list to select them

#47 AndrewRadev closed 5 days ago
0
Trim package dependencies

#46 AndrewRadev closed 3 days ago
0
Cache AMSM data from GeoStaS calculations into intermediate file

#45 AndrewRadev closed 3 days ago
1
Generate snakemake reports

#44 AndrewRadev opened 1 week ago
2
Generate a pymol domain highlighting script in pipeline

#43 AndrewRadev opened 1 week ago
0
Extract code in `scripts/` into classes that the snakemake file invokes

#42 AndrewRadev opened 1 week ago
4
Use bio3d to generate NMA for CA and for all atoms, compare

#41 AndrewRadev opened 1 week ago
0
Use bio3d to generate illustrations of domain assignment in data pipeline

#40 AndrewRadev opened 1 week ago
0
Blender: import animations

#39 AndrewRadev closed 1 week ago
0
Upload segmentation TSV in blender, color atoms by domain

#38 AndrewRadev closed 5 days ago
0
Insert animation keyframes with a progress bar

#37 AndrewRadev closed 1 week ago
1
Render atoms of uploaded file, animate trajectory

#36 AndrewRadev closed 1 week ago
0
Try topology analysis (MST/Mapper/Leiden) for domain segmentation

#35 AndrewRadev opened 1 week ago
0
Automate building of wheels

#34 AndrewRadev opened 1 week ago
0
Blender addon: File input, dependencies

#33 AndrewRadev closed 1 week ago
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Streamline segmentation pipeline, collect single output file

#32 AndrewRadev closed 1 week ago
0
Parse NMD file, generate trajectory

#31 AndrewRadev closed 2 weeks ago
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Generate simple trajectory from normal modes

#30 AndrewRadev closed 2 weeks ago
0
Blender addon

#29 mkrunic closed 2 weeks ago
0
Try MD-TASK for segmentation

#28 AndrewRadev closed 2 weeks ago
0
Run snakemake on the VSC

#27 AndrewRadev closed 6 days ago
1
Extract data from NMD or map with PDB structure

#26 emmarousseau closed 1 week ago
1
Surround group of atoms with a surface

#25 AndrewRadev closed 1 day ago
1
Crambin rendering performance improvement

#24 AndrewRadev closed 1 week ago
1
Segmentation methods inconsistency

#23 evgenia-polez opened 3 weeks ago
1
Sort through data and file types

#22 emmarousseau closed 1 week ago
1
Pin packages in micromamba environment

#21 AndrewRadev closed 3 weeks ago
1
Validate that a topology file and a trajectory fit together

#20 AndrewRadev closed 1 week ago
1
Add PCA rules to the pipeline

#19 AndrewRadev closed 3 weeks ago
0
Snakefile integration

#18 AndrewRadev closed 4 weeks ago
0
Integration of Chainsaw, Merizo, PCA

#17 AndrewRadev closed 4 weeks ago
0
Segmentation

#16 evgenia-polez closed 4 weeks ago
0
Essential Dynamics Analysis

#15 emmarousseau closed 4 weeks ago
0
Explore MD-TASK

#14 AndrewRadev closed 3 weeks ago
0
Skeleton for the blender UI

#13 AndrewRadev closed 1 month ago
1
Get chainsaw working on windows

#12 AndrewRadev closed 1 week ago
1