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AstraZeneca-NGS
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VarDictJava
VarDict Java port
MIT License
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Problem upgrading from Perl Vardict to Java Vardict
#348
Graeme-Smith
opened
2 years ago
1
Updated submodule and version for 1.8.3
#347
PolinaBevad
closed
2 years ago
0
Fixed check for introns for the case when deletion is next to insertion.
#346
PolinaBevad
closed
2 years ago
0
GT vardict info
#344
asmlgkj
closed
3 years ago
1
z
#343
worker000000
closed
3 years ago
0
<dup-10> in one of the alternate alleles
#342
ghost
opened
3 years ago
2
index out of bound error related to hard clipping STILL an issue
#341
rebber
opened
3 years ago
2
Last position of Complex variant shows as SNV
#340
arturotorreso
closed
3 years ago
4
AF vs HIAF
#339
jsha129
closed
3 years ago
2
NumberFormatException
#338
marrip
closed
3 years ago
1
PMean value description requires a bit more extra explanation
#337
tahuh
closed
2 years ago
0
Sterimol descriptors with a python chemistry lib like chemlib
#336
Montana
opened
3 years ago
0
Travis CI update (faster/optimization) exclusively made for AstraZeneca
#335
Montana
opened
3 years ago
0
Variants in amplicon samples
#334
Montana
closed
3 years ago
1
Not reporting the correct contig length
#333
Montana
closed
3 years ago
1
Adaptors in local realignment
#332
Montana
closed
3 years ago
1
My Travis CI Update for AstraZeneca optimization
#331
Montana
opened
3 years ago
0
Missing target positions when running with pileup (-p) and no local realignment options
#330
leonghs
opened
3 years ago
6
Question about FILTER and AF threshold
#329
grafitos
opened
3 years ago
0
-L option for <DUP> structural variants
#328
NEOGrok
opened
3 years ago
2
Duplication variant called with Strand Bias issue
#326
alexander-e-f-smith
opened
3 years ago
0
Variants missing in amplicon samples
#325
PabloCabaleiro
opened
3 years ago
2
log/progress file
#324
zmiimz
opened
3 years ago
1
Sum of AD field not matching DP
#323
elleira
opened
3 years ago
5
why can I use "qsub" to run the VarDict task?
#322
windtalker6
closed
3 years ago
2
Missing genotype/format fields improperly formatted
#321
nh13
closed
4 years ago
1
VCF contig header lines not reporting the correct contig length
#320
dgomezpere
opened
4 years ago
0
Version and integration tests for VCF 4.2
#319
PolinaBevad
closed
4 years ago
0
test and p-value for step iv of vardict workflow
#318
ALFLAG
closed
4 years ago
3
Integration tests updates
#317
PolinaBevad
closed
4 years ago
0
Depth != RefFwdReads + RefRevReads
#316
gudeqing
opened
4 years ago
3
Meaning of -3 option
#315
gudeqing
opened
4 years ago
0
add conda and usegalaxy badge
#314
bgruening
closed
4 years ago
1
Paired variant calling how to set the value of option "-k"
#313
liuzhen51032
opened
4 years ago
1
A germline SNV called as somatic
#312
Gerde
opened
4 years ago
2
Bam file with realigned reads
#311
bkohrn
opened
4 years ago
1
Removed updated comment from release script
#310
PolinaBevad
closed
4 years ago
0
Q) --deldupvar option
#309
dauss75
closed
4 years ago
2
Description of any thresholds/limits used in SV/DUP detection?
#308
tfenne
opened
4 years ago
1
Added fixes to integration tests
#307
PolinaBevad
closed
4 years ago
0
insertion position and length seems to not right
#306
shiwanyin
opened
4 years ago
5
Only one variant identified
#305
luisacusick
closed
4 years ago
6
running with -P 1 seems not to work well
#304
shiwanyin
closed
4 years ago
4
Add support for single primer amplicon designs
#303
crutching
closed
4 years ago
1
Uninitialized value in join or string, line 2230-2231
#302
luisacusick
closed
4 years ago
2
Amplicon Mode for QIAseq Designs
#301
crutching
opened
4 years ago
6
Running on WGS data
#300
vymao
closed
4 years ago
8
VCF records with missing REF field are output in gVCF
#299
mjhipp
closed
4 years ago
5
Fix for REF variants in amplicon pileup mode
#297
PolinaBevad
closed
4 years ago
0
PMean value is incorrectly or confusingly reported.
#296
scottrk
closed
3 years ago
4
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