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Australian-Imaging-Service
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pipelines
Scripts to generate analysis pipelines that can be run in XNAT's container service
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[STORY] De-identify AILDR projects
#239
tclose
opened
1 year ago
0
[FEATURE] T1-weighted pipeline for FRONTIER project
#238
tclose
opened
1 year ago
1
`from fileformats.medimage import MghZip` should allow to use `.mgz` files within a workflow (ie., just as `from fileformats.medimage import NiftiGz` permits use of `.nii.gz`. However, there seems to be an error with how `.mgz` files are handled, described as described below. Workaround has been to create an intermediate `.nii.gz' `raise FormatMismatchError(
#237
arkiev
closed
1 year ago
0
[EPIC] Other Commitments
#236
tclose
opened
1 year ago
2
[STORY] segment T1-weighted anatomical MRI images (Bugs to fix) #230
#235
arkiev
opened
1 year ago
0
[FEATURE] Check in with survey respondents for updates on pipeline priorities
#234
tclose
opened
1 year ago
1
[STORY] register T1-weighted anatomical image to DWI
#233
arkiev
closed
6 months ago
0
[STORY] deepbet implementation in Pydra
#232
arkiev
opened
1 year ago
0
[STORY] generate population template of anatomical images
#231
arkiev
opened
1 year ago
0
[STORY] segment T1-weighted anatomical MRI images
#230
arkiev
closed
9 months ago
0
[FEATURE] Specify resources required by pipelines
#229
tclose
opened
1 year ago
1
[FEATURE] Launch Jupyter notebook for debugging CS pipelines from XNAT
#228
tclose
opened
1 year ago
1
Added sMRIPrep back in
#227
tclose
closed
10 months ago
0
copied across fixes from pipelines-community into release.yaml
#226
tclose
closed
1 year ago
0
Update license handling and format specifications
#225
tclose
closed
1 year ago
0
[STORY] Write unittests for ported pydra-ants interfaces
#224
Mahdieh-dst
closed
1 year ago
1
[STORY] Create pull-request on Pydra repository regarding mandatory XOR inputs
#223
tclose
closed
1 year ago
2
[STORY] Summary of QC methods
#222
tclose
opened
2 years ago
1
[STORY] Override of field type in task interface auto-port script
#221
tclose
opened
2 years ago
0
[STORY] Compare the connections in nipype wf and the pydra wf generated by the nipype-to-pydra wf convertor
#220
Mahdieh-dst
opened
2 years ago
1
[STORY] Compare generated connection graphs between ported pydra and original nipype workflows
#219
Mahdieh-dst
closed
2 years ago
1
[STORY] Write a convertor script to convert nested nipype to pydra workflows
#218
Mahdieh-dst
opened
2 years ago
1
[FEATURE] Nipype to Pydra workflow conversion
#217
Mahdieh-dst
opened
2 years ago
1
[STORY] Port remaining interfaces required for sMRIPrep - Part III
#216
tclose
opened
2 years ago
0
[STORY] Write up BrainHack projects
#215
tclose
closed
1 year ago
1
[FEATURE] Auto-generated methods section with citations
#214
tclose
opened
2 years ago
1
[STORY] Add ability to download OpenNeuro datasets in medimages4tests
#213
tclose
closed
1 year ago
1
[STORY] Port Neurodocker to use latest Click dependency
#212
tclose
closed
1 year ago
1
[STORY] Clean up file/directory path handling in Pydra and create PR
#211
tclose
opened
2 years ago
1
[STORY] Finish auto-port script for Nipype -> Pydra workflows
#210
tclose
closed
2 years ago
1
[FEATURE] Add ability to deploy pipelines to Flywheel Gears
#209
tclose
opened
2 years ago
1
[STORY] Ensure the description of the XNAT commands include tool name + version
#208
tclose
opened
2 years ago
0
[STORY] Add correct labels to GHCR packages
#207
tclose
opened
2 years ago
0
[STORY] Debug QSIPrep BIDS app
#206
tclose
opened
2 years ago
0
[STORY] Prepare slides explaining Arcana analysis classes
#205
tclose
closed
2 years ago
1
[STORY] Prepare slides explaining AIS pipelines for XNAT workshop
#204
tclose
closed
2 years ago
0
[STORY] Prepare slides explaining AIS deployment on k8s
#203
tclose
closed
2 years ago
1
[STORY] Sort out clean up of built docker images in package release
#202
tclose
opened
2 years ago
0
[STORY] Clean up versioning in auto-generated docs
#201
tclose
opened
2 years ago
0
[STORY] Update to long descriptions don't trigger rebuild of pipeline images
#200
tclose
opened
2 years ago
0
[STORY] Port Freesurfer ApplyVolTransform Nipype interface to Pydra
#199
tclose
opened
2 years ago
1
[STORY] Port Freesurfer MRIsConvert Nipype interface to Pydra
#198
tclose
opened
2 years ago
0
[STORY] Complete auto updating of features/epics with links - Part II
#197
tclose
opened
2 years ago
0
[STORY] Port remaining interfaces required for sMRIPrep - Part II
#196
tclose
closed
2 years ago
1
[FEATURE] Prepare talk for XNAT workshop
#195
tclose
closed
1 year ago
1
[STORY] Sort out issue with images not being cleaned up by deploy build
#194
tclose
opened
2 years ago
0
Fixes for auto updating of features/epics with links
#193
aswinnarayanan
closed
2 years ago
0
[STORY] Write unittest to cover a line in the PR patch
#192
tclose
opened
2 years ago
0
[STORY] Write unittest to cover listing of blocked tasks in Pydra PR
#191
tclose
opened
2 years ago
0
[STORY] Present parameters of scans that are flagged as wrong
#190
mrusyd
opened
2 years ago
0
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