issues
search
BCCDC-PHL
/
fluviewer-nf
Nextflow pipeline for influenza A whole genome sequence analysis
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update snp calling module
#42
jpalmer37
opened
2 days ago
0
Update AA mutation calling module
#41
jpalmer37
opened
2 days ago
1
Version conflict between Matplotlib et numpy
#40
EricFournier3
closed
1 week ago
1
Add support for apptainer containers
#39
jpalmer37
opened
3 weeks ago
0
Remove automatic Nextclade dataset updates and improve provenance tracking
#38
jpalmer37
opened
1 month ago
1
Revert automated Nextclade dataset retrieval in favour of fixed datasets and regimented updates
#37
jpalmer37
opened
1 month ago
0
Update README
#36
dfornika
closed
1 month ago
0
Add support for singularity/apptainer containers
#35
dfornika
opened
1 month ago
1
Fix blastx version in provenance
#34
dfornika
closed
1 month ago
0
Update README prior to tagging next release
#33
dfornika
closed
1 month ago
0
Formatting of `tool_version` value for `blastx` tool in `snp_calling` process
#32
dfornika
closed
1 month ago
0
Update Nextclade version and default datasets
#31
jpalmer37
closed
1 month ago
2
Update Nextclade version and associated default datasets
#30
jpalmer37
closed
1 month ago
0
Bump FluViewer version to v0.1.11-6
#29
dfornika
closed
2 months ago
0
Bump FluViewer version (again)
#28
dfornika
closed
2 months ago
0
Bump fluviewer version
#27
dfornika
closed
2 months ago
0
Bump FluViewer version
#26
dfornika
closed
2 months ago
0
Fix clade calling
#25
dfornika
closed
1 month ago
0
fix fluviewer log & error copying approach
#24
jpalmer37
closed
1 month ago
1
Add separate read normalization step
#23
dfornika
closed
2 months ago
0
Bump FluViewer version
#22
dfornika
closed
2 months ago
0
Bump FluViewer version
#21
dfornika
closed
2 months ago
0
Pin setuptools to avoid conflict with spades
#20
dfornika
closed
2 months ago
0
Incompatibility between `spades=3.15.3` and `setuptools=70.*` in FluViewer environment
#19
dfornika
closed
2 months ago
0
Collect QC stats from FluViewer in MultiQC report
#18
dfornika
opened
2 months ago
0
`clade_calling` process is failing
#17
dfornika
closed
1 month ago
0
Add bbnorm process upstream of fluviewer
#16
dfornika
closed
2 months ago
0
Add support for samplesheet input
#15
dfornika
closed
2 months ago
0
Add support for `--samplesheet_input`
#14
dfornika
closed
2 months ago
0
Fix output file handling in fluviewer process
#13
jpalmer37
closed
1 month ago
2
add db and fastq_input parameter checks
#12
jpalmer37
closed
2 months ago
0
changed outdir schema for all processes
#11
jpalmer37
closed
2 months ago
0
New fluviewer conda environment complaining about missing pip
#10
jpalmer37
closed
2 months ago
1
Make test workflow more stringent
#9
dfornika
opened
2 months ago
0
Adopt BCCDC-PHL/FluViewer
#8
dfornika
closed
2 months ago
2
Consider adopting BCCDC-PHL/FluViewer
#7
dfornika
closed
2 months ago
0
Remove `--versioned_outdir` param
#6
dfornika
closed
3 months ago
0
Work on testing pipeline
#5
dfornika
closed
3 months ago
4
Move responsibility for higher-level output directory structure outside pipeline
#4
dfornika
closed
2 months ago
0
Behavior when `--db` param isn't included
#3
dfornika
closed
2 months ago
0
Add testing pipeline
#2
dfornika
closed
3 months ago
1
Add a GitHub Actions-based testing workflow
#1
dfornika
closed
3 months ago
0