BEAST2-Dev bdsky issues

BEAST2-Dev / bdsky

Birth Death Serial Skyline Model for BEAST2

GNU General Public License v3.0

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issues

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Documentation for setting rateChangeTimes

#35 m-d-grunnill opened 1 week ago
4
BDSky template for morphological analyses with serial sampling

#34 jugne closed 21 hours ago
0
Add morphological analysis template for serial sampling

#33 jugne closed 21 hours ago
1
BEAUTi: missing Tree prior parameters when switching between templates

#32 jugne closed 2 weeks ago
2
Testbranch

#31 denisekuehnert closed 1 year ago
0
Changes for diversified sampling and OU prior

#30 zhangchicool closed 1 year ago
1
Installation failed

#29 StephanieRodrigues closed 3 years ago
1
BDSKY has been failing a unit test since January 2019.

#28 tgvaughan closed 4 years ago
2
Sampling proportion estimation not allowed by BEAUti template.

#27 tgvaughan closed 5 years ago
1
Latest release 1.4.5 is missing template XML.

#26 tgvaughan closed 5 years ago
1
BDSKY_contemptreeScaler.t:$(n) in BDSKY_contemp.xml and BDSKY_multiRho.xml

#25 rbouckaert closed 5 years ago
4
Condition on rho and on the root is incorrect.

#24 gavryushkina closed 5 years ago
1
Not using SA operators for SA analysis should be a fatal error

#23 laduplessis closed 4 years ago
1
BDSKY for HIV

#22 antoine4ucsd closed 4 years ago
1
InputEditor for rates and rateChangeTimes

#21 gavryushkina opened 7 years ago
1
Trouble resuming BirthDeathSkylineModel

#20 rbouckaert closed 7 years ago
0
extending BDSKY needs changes to access modifiers

#19 boskovav closed 7 years ago
0
BDSKY depends on SA package

#18 rbouckaert opened 7 years ago
3
BDSKY 1.3.3 release breaks backward compatibility of XML files built with previous BDSKY module versions

#17 gattil closed 4 years ago
1
condition on root in FBD model

#16 gavryushkina closed 7 years ago
0
BEAUTI template

#15 sebastianduchene closed 7 years ago
1
JUnit tests for random/diversified sampling and conditioning on root

#14 zhangchicool closed 7 years ago
0
added diversified sampling and a new parametrization, plus improved numerical stability

#13 zhangchicool closed 7 years ago
0
unsuccessful pull request (another is opened)

#12 zhangchicool closed 7 years ago
0
logP being positive infinity

#11 zhangchicool closed 7 years ago
2
R0->Reproductive number

#10 gavryushkina closed 7 years ago
1
Cannot select Birth Death Skyline Contemporary in BEAUti

#9 tgvaughan closed 7 years ago
1
solved conflict about the new parameterization

#8 zhangchicool closed 8 years ago
1
new parameterization

#7 zhangchicool closed 8 years ago
0
new parameterization

#6 zhangchicool closed 8 years ago
1
Cite not site typo

#5 SimonGreenhill closed 9 years ago
0
Tree operators should move to tree prior templates.

#4 gavryushkina closed 9 years ago
0
BEAUti shows that FBD skyline can not handle tip dates

#3 gavryushkina closed 7 years ago
1
When rhoSamplingConditionHolds is called r might not be initialised

#2 gavryushkina closed 9 years ago
1
Add condition on rho-sampling instead of condition on survival if there is rho sampling

#1 gavryushkina closed 9 years ago
1