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BIO-DIKU
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SeqScan
Pattern matching in biological sequences
GNU General Public License v2.0
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README refers to a nonexistent DOT rule
#113
selkovjr
opened
7 years ago
3
Bracket (Stockholm) notation in README
#112
RasmusFonseca
opened
8 years ago
0
Status of implemented features
#111
maasha
opened
8 years ago
0
Issue109
#110
maasha
closed
8 years ago
0
Put the standard match-matrix in the readme
#109
RasmusFonseca
closed
8 years ago
0
Overlap policy in README examples
#108
maasha
opened
8 years ago
0
Bad examples in README
#107
maasha
closed
8 years ago
1
Sanity check group unit with edit modifiers
#106
RasmusFonseca
opened
8 years ago
1
Remove travis
#105
RasmusFonseca
closed
8 years ago
2
FASTQ score handling
#104
maasha
opened
8 years ago
0
Add support for FASTQ format
#103
maasha
opened
8 years ago
0
Bug in group unit
#102
maasha
closed
8 years ago
4
Bug in KMP unit. Didn't respect stay_at_pos argument. Tests added.
#101
RasmusFonseca
closed
8 years ago
1
Debug repeat unit
#100
RasmusFonseca
closed
8 years ago
0
Fixed issue #93 ...
#99
RasmusFonseca
closed
8 years ago
0
added test
#98
maasha
closed
8 years ago
0
Clone in group unit
#97
RasmusFonseca
closed
8 years ago
0
Feature refactor backtrackers
#96
RasmusFonseca
closed
8 years ago
0
Move pu/backtrack* to pu/backtrack/
#95
maasha
closed
8 years ago
1
Optparse sanity checker
#94
maasha
closed
8 years ago
0
bitset test argument out of range
#93
maasha
closed
8 years ago
10
Whitespace around pattern breaks
#92
maasha
opened
8 years ago
4
Pattern unit cloning fail
#91
maasha
closed
8 years ago
1
Parsing of match group with repeats fail
#90
maasha
closed
8 years ago
0
removed deprecated FASTA reader - we use BioIO
#89
maasha
closed
8 years ago
0
Feature multifactories
#88
RasmusFonseca
closed
8 years ago
3
Feature main
#87
maasha
closed
8 years ago
1
Refactor backtrackers
#86
RasmusFonseca
closed
8 years ago
0
Parsing a matrix file without a complement matrix breaks
#85
maasha
opened
8 years ago
0
Feature backtrack indels
#84
RasmusFonseca
closed
8 years ago
1
First draft of backtrack algorithm that supports edits
#83
RasmusFonseca
closed
8 years ago
1
Add unit test to BacktrackEditsUnit
#82
RasmusFonseca
opened
8 years ago
0
Feature c make parser
#81
RasmusFonseca
closed
8 years ago
0
parster_generator cmake file needs attention
#80
maasha
opened
8 years ago
0
io.h io.cc are obsolete
#79
maasha
closed
8 years ago
0
complement reverse/both and no complement match matrix should throw an exception
#78
maasha
opened
8 years ago
0
Optparse sanity check
#77
maasha
closed
8 years ago
0
added magic option to OptParse
#76
maasha
closed
8 years ago
0
Fix main.cc
#75
maasha
closed
8 years ago
0
backtrack unit indels and edits are missing
#74
maasha
closed
8 years ago
0
multiple PatternUnitFactory
#73
maasha
closed
8 years ago
0
Add strategy option to OptParse
#72
maasha
closed
8 years ago
0
Add indels + edit tags to TNFA
#71
maasha
opened
8 years ago
2
Add ResMacher to TNFA
#70
maasha
opened
8 years ago
0
opt_parse sanity checks
#69
maasha
closed
8 years ago
4
Error handling
#68
maasha
closed
8 years ago
3
Group unit
#67
RasmusFonseca
closed
8 years ago
0
Document parser/parse_tree_unit.h
#66
maasha
opened
8 years ago
0
Unit tests for pattern_unit_creator are missing
#65
maasha
opened
8 years ago
0
Document SanityChecker in pu_factory/sanity_checker.h
#64
maasha
closed
8 years ago
1
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