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Benchmarking-Initiative
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Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
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Fujita_SciSignal2010 test data
#131
dilpath
closed
2 years ago
0
add Laske to README, update stats script
#130
dilpath
closed
2 years ago
0
Fix Alkan_SciSignal2018
#129
dilpath
closed
2 years ago
8
citation/reference to original models
#128
anandijain
closed
3 years ago
2
Issue #83 (https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/issues/83)
#127
C-Peiter
closed
2 years ago
16
Add Ouzounoglou et al. (2014)
#126
stephanmg
opened
3 years ago
0
Add Jenkins et al. (2011)
#125
stephanmg
opened
3 years ago
0
Add Hartoyoa et al. (2019)
#124
stephanmg
opened
3 years ago
0
Run checks on GHA instead of TravisCI
#123
dweindl
closed
3 years ago
0
Add script to generate problem overview
#122
dweindl
closed
3 years ago
0
Add Oliveira et al. (2021)
#121
lorenapohl
closed
3 years ago
1
Implemented Oliveira_Nat2021 model
#120
lorenapohl
closed
3 years ago
1
Rename Bruno_JExpBio to Bruno_JExpBot
#119
dilpath
closed
3 years ago
0
fix loss of precision in Boehm data
#118
FFroehlich
closed
3 years ago
0
simplify observables in Fiedler_BMC2016
#117
FFroehlich
closed
3 years ago
0
Fixed link to PEtab
#116
LeonardSchmiester
closed
3 years ago
0
Update measurementData_Fiedler_BMC2016.tsv
#115
FFroehlich
closed
3 years ago
3
Complicated Model Implementation for Beer_MolBioSystems2014
#114
FFroehlich
closed
2 years ago
1
Weber doesn't mark `std_yCERTt`, `std_yPI4K3Bt`, `std_yPKDt` as fixed but they are in the d2d example
#113
FFroehlich
closed
2 years ago
2
Model isensee jcb2018
#112
LeonardSchmiester
closed
3 years ago
0
Model Raimundez PCB 2020 - close #55
#111
elbaraim
closed
3 years ago
1
Add Kok et al. (2020)
#110
LeonardSchmiester
closed
3 years ago
0
Model lucarelli cell systems2018
#109
LeonardSchmiester
closed
3 years ago
0
Add McKenna et al. (2021)
#108
LeonardSchmiester
opened
3 years ago
0
fix parameter scale in Chen - close #21
#107
elbaraim
closed
3 years ago
2
Weird log/lin specifications in Chen2009
#106
FFroehlich
closed
3 years ago
11
Migrate .travis.yml to GHA
#105
dweindl
closed
3 years ago
1
Changed python version
#104
LeonardSchmiester
closed
3 years ago
0
added Okuonghae_ChaosSolitonsFractals2020 model
#103
PaulJonasJost
closed
3 years ago
0
Add Okuonghae et al. (2020)
#102
PaulJonasJost
closed
3 years ago
0
implemented Bertozzi (2020) close #99
#101
vanako
closed
3 years ago
5
implemented Bertozzi (2020) close #99
#100
vanako
closed
3 years ago
1
Add Bertozzi_PNAS2020 (Bertozzi et al., 2020)
#99
vanako
closed
3 years ago
1
Add Zitzmann et al. (2020b)
#98
LeonardSchmiester
opened
3 years ago
0
added model Giordano_Nature2020
#97
PaulJonasJost
closed
3 years ago
2
add Giordano et al. (2020)
#96
elbaraim
closed
3 years ago
0
Model zhao quant biol2020
#95
dilpath
closed
3 years ago
0
Implemented Zhao (2020) close #93
#94
iewert
closed
3 years ago
4
add Zhao (2020)
#93
elbaraim
closed
3 years ago
0
Add Kok et al. (2020)
#92
LeonardSchmiester
opened
4 years ago
0
Add Milias-Argeitis et al. (2016)
#91
elbaraim
opened
4 years ago
0
Add model names to avoid recompilation.
#90
dilpath
closed
4 years ago
0
Add Mosbacher et al. (2020)
#89
LeonardSchmiester
closed
1 year ago
2
Mosbacher et al. (2020)
#88
JanHasenauer
closed
4 years ago
1
Add Zitzmann et al. (2020)
#87
LeonardSchmiester
opened
4 years ago
0
Add new model RaimĂșndez et al. (2021)
#86
LeonardSchmiester
opened
4 years ago
4
Added Model bachmann msb2011
#85
LeonardSchmiester
closed
4 years ago
0
Add Schmiester et al. (2019)
#84
LeonardSchmiester
opened
4 years ago
0
Add Laske et al. (2019)
#83
JanHasenauer
closed
2 years ago
4
Add models with oscillations
#82
LeonardSchmiester
opened
4 years ago
5
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