issues
search
Benchmarking-Initiative
/
Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
26
stars
14
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
add visualization files Brannmark, Borghans, Crauste, Elowitz, Perels…
#179
plakrisenko
closed
1 year ago
2
fix colum name in simulation_df
#178
plakrisenko
closed
1 year ago
0
Add Smith_BMCSystBiol2013
#177
FFroehlich
closed
1 year ago
0
Add Ildefonso et al. (2023)
#176
C-Peiter
opened
1 year ago
0
Errors in Chen_MSB2009 benchmark
#175
FFroehlich
opened
1 year ago
4
fix noise distributions in the models overview
#174
plakrisenko
closed
1 year ago
0
Fixed wrong reference to research article from Laske model
#173
C-Peiter
closed
1 year ago
0
Updated reference Laske
#172
C-Peiter
closed
1 year ago
2
why is Laske called Laske?
#171
FFroehlich
closed
1 year ago
3
mislabeling Giordano_Nature2020
#170
FFroehlich
opened
1 year ago
0
Machine readable model property overview
#169
FFroehlich
opened
1 year ago
2
Specification of model time in observables file unclear
#168
shoepfl
closed
1 year ago
1
Add python package
#167
yannikschaelte
closed
2 years ago
5
Simplify installation
#166
yannikschaelte
closed
2 years ago
1
Adding CITATION.cff file.
#165
stephanmg
closed
10 months ago
2
Add CITATION.cff
#164
dweindl
opened
2 years ago
1
Add published optimum to Blasi PEtab Select problem
#163
dilpath
closed
2 years ago
0
`Fujita_SciSignal2018`: fix vis spec
#162
dilpath
closed
2 years ago
0
Added Froehlich Cell Systems 2018 model. Closes #78
#161
LeonardSchmiester
closed
2 years ago
3
merge master into Froehlich_CS2018
#160
LeonardSchmiester
closed
2 years ago
0
Model froehlich cs2018
#159
LeonardSchmiester
closed
2 years ago
0
Fix blasi select measurements
#158
dilpath
closed
2 years ago
0
Add Blasi model selection problem
#157
dilpath
closed
2 years ago
0
Add missing visualization files
#156
dilpath
opened
2 years ago
2
Change `<model>` `metaid` in all models
#155
dilpath
opened
2 years ago
0
PR template for new PEtab problems
#154
dilpath
closed
2 years ago
0
Fix model IDs, names, and missing references
#153
dilpath
closed
2 years ago
4
Check SBML metadata, refactor and move scripts
#152
dilpath
closed
2 years ago
0
Okuonghae_ChaosSolitonsFractals2020: convert fixed initial assignments to parameter values
#151
dilpath
closed
2 years ago
0
Add missing references to SBML files
#150
dilpath
closed
2 years ago
0
Overview table: link to respective publication
#149
dweindl
closed
2 years ago
0
Overview table: link to respective directory
#148
dweindl
closed
2 years ago
0
Change SBML model ID and name to benchmark ID, in all models
#147
dilpath
closed
2 years ago
0
add pre/postequilibration info, count piecewise in parameters as events
#146
plakrisenko
closed
1 year ago
2
Adding suggestion of optimizers for benchmark models.
#145
stephanmg
opened
2 years ago
2
Fix Isensee prior
#144
FFroehlich
closed
2 years ago
0
Fix priors for Schwen, Bachmann
#143
FFroehlich
closed
2 years ago
1
Add CODEOWNERS file
#142
dilpath
closed
1 year ago
2
Add priors to Schwen Model, fixes #139
#141
FFroehlich
closed
2 years ago
4
Fix lucarelli
#140
FFroehlich
closed
2 years ago
3
Schwen_PONE2014 is missing priors
#139
FFroehlich
closed
2 years ago
0
Fix Isensee_JCB2018
#138
FFroehlich
closed
2 years ago
1
Isensee_JCB2018 is missing parameter priors
#137
FFroehlich
closed
2 years ago
0
Fix Bachmann_MSB2011
#136
FFroehlich
closed
2 years ago
6
Bachmann_MSB2011 missing prior for init_EpoRJAK2
#135
FFroehlich
closed
2 years ago
0
Simplify Beer, fixes #114
#134
FFroehlich
closed
2 years ago
3
Update parameters_Weber_BMC2015.tsv
#133
FFroehlich
closed
2 years ago
0
Fix bounds and scales for some parameters in Isensee_JCB2018
#132
dilpath
opened
2 years ago
7
Fujita_SciSignal2010 test data
#131
dilpath
closed
2 years ago
0
add Laske to README, update stats script
#130
dilpath
closed
2 years ago
0
Previous
Next